IGVFDS6353IHVX

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        "igvf:corces_measurementSet_RP014_G5_RNA"
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        "status": "released",
        "term_name": "single-nucleus RNA sequencing assay"
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                "detail": "Preview human donor [IGVFDO9211DWXZ](/human-donors/IGVFDO9211DWXZ/) has in progress subobject phenotypic feature [a0a18d18-51af-4fbc-9a8c-baa6f6b720cd](/phenotypic-features/a0a18d18-51af-4fbc-9a8c-baa6f6b720cd/).",
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                "detail": "Preview human donor [IGVFDO9211DWXZ](/human-donors/IGVFDO9211DWXZ/) has in progress subobject phenotypic feature [c2f14d65-c7f8-46d1-8093-818906473518](/phenotypic-features/c2f14d65-c7f8-46d1-8093-818906473518/).",
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                "detail": "Preview human donor [IGVFDO9211DWXZ](/human-donors/IGVFDO9211DWXZ/) has in progress subobject phenotypic feature [a393f393-5482-4671-b57c-fe8bfe6e8927](/phenotypic-features/a393f393-5482-4671-b57c-fe8bfe6e8927/).",
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            {
                "category": "mismatched status",
                "detail": "Preview human donor [IGVFDO9211DWXZ](/human-donors/IGVFDO9211DWXZ/) has in progress subobject phenotypic feature [5206796d-df44-42d5-a495-92cfc4ef55c6](/phenotypic-features/5206796d-df44-42d5-a495-92cfc4ef55c6/).",
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            {
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                "detail": "Preview human donor [IGVFDO7606UOXI](/human-donors/IGVFDO7606UOXI/) has in progress subobject phenotypic feature [79174baf-cf63-4144-9cc8-050157e38fc4](/phenotypic-features/79174baf-cf63-4144-9cc8-050157e38fc4/).",
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            {
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                "detail": "Preview human donor [IGVFDO7606UOXI](/human-donors/IGVFDO7606UOXI/) has in progress subobject phenotypic feature [f7b2d235-fce3-4250-8abf-9a226d1f190f](/phenotypic-features/f7b2d235-fce3-4250-8abf-9a226d1f190f/).",
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            {
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                "detail": "Preview human donor [IGVFDO7606UOXI](/human-donors/IGVFDO7606UOXI/) has in progress subobject phenotypic feature [bb1e3012-380e-4519-9238-8839d272804c](/phenotypic-features/bb1e3012-380e-4519-9238-8839d272804c/).",
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            {
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            {
                "category": "mismatched status",
                "detail": "Preview human donor [IGVFDO4191KJBR](/human-donors/IGVFDO4191KJBR/) has in progress subobject phenotypic feature [720bd45c-2c73-4875-a5b5-e72cc71bb6d0](/phenotypic-features/720bd45c-2c73-4875-a5b5-e72cc71bb6d0/).",
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            {
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            {
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            {
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            {
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            {
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            {
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            {
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            {
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            {
                "category": "mismatched status",
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            {
                "category": "mismatched status",
                "detail": "Preview human donor [IGVFDO0966KXTA](/human-donors/IGVFDO0966KXTA/) has in progress subobject phenotypic feature [6a401974-b8df-482a-b734-fab7683a6f39](/phenotypic-features/6a401974-b8df-482a-b734-fab7683a6f39/).",
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            {
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            {
                "category": "mismatched status",
                "detail": "Preview human donor [IGVFDO0966KXTA](/human-donors/IGVFDO0966KXTA/) has in progress subobject phenotypic feature [ae18045e-aea2-45bb-b765-de3f2b965b59](/phenotypic-features/ae18045e-aea2-45bb-b765-de3f2b965b59/).",
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            {
                "category": "mismatched status",
                "detail": "Preview human donor [IGVFDO0966KXTA](/human-donors/IGVFDO0966KXTA/) has in progress subobject phenotypic feature [a5b8945b-e2c3-49f2-96d9-e9c91bd1fe1c](/phenotypic-features/a5b8945b-e2c3-49f2-96d9-e9c91bd1fe1c/).",
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            {
                "category": "mismatched status",
                "detail": "Preview human donor [IGVFDO7732SCUF](/human-donors/IGVFDO7732SCUF/) has in progress subobject phenotypic feature [64e0b093-a25e-4821-91dc-13e0423a4012](/phenotypic-features/64e0b093-a25e-4821-91dc-13e0423a4012/).",
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            {
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            },
            {
                "category": "mismatched status",
                "detail": "Preview human donor [IGVFDO7732SCUF](/human-donors/IGVFDO7732SCUF/) has in progress subobject phenotypic feature [9d015d81-ece3-4dfd-8ab8-f27043345220](/phenotypic-features/9d015d81-ece3-4dfd-8ab8-f27043345220/).",
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                "name": "audit_item_status",
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            {
                "category": "mismatched status",
                "detail": "Preview human donor [IGVFDO7732SCUF](/human-donors/IGVFDO7732SCUF/) has in progress subobject phenotypic feature [98558ab7-1343-41e5-8118-87284cd16293](/phenotypic-features/98558ab7-1343-41e5-8118-87284cd16293/).",
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            {
                "category": "mismatched status",
                "detail": "Preview human donor [IGVFDO0411QFOF](/human-donors/IGVFDO0411QFOF/) has in progress subobject phenotypic feature [f002bd57-9c69-46f5-baeb-02ef36f0ae95](/phenotypic-features/f002bd57-9c69-46f5-baeb-02ef36f0ae95/).",
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            {
                "category": "mismatched status",
                "detail": "Preview human donor [IGVFDO0411QFOF](/human-donors/IGVFDO0411QFOF/) has in progress subobject phenotypic feature [e469ed8e-b7b3-43ab-911f-20f855038419](/phenotypic-features/e469ed8e-b7b3-43ab-911f-20f855038419/).",
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            {
                "category": "mismatched status",
                "detail": "Preview human donor [IGVFDO0411QFOF](/human-donors/IGVFDO0411QFOF/) has in progress subobject phenotypic feature [457ba560-b6d1-4bea-b7fa-c043ca79ab7b](/phenotypic-features/457ba560-b6d1-4bea-b7fa-c043ca79ab7b/).",
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                "name": "audit_item_status",
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            {
                "category": "mismatched status",
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                "name": "audit_item_status",
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            },
            {
                "category": "mismatched status",
                "detail": "Preview human donor [IGVFDO0411QFOF](/human-donors/IGVFDO0411QFOF/) has in progress subobject phenotypic feature [99530794-7cba-40b4-a9d0-816f682a6751](/phenotypic-features/99530794-7cba-40b4-a9d0-816f682a6751/).",
                "level": 30,
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                "name": "audit_item_status",
                "path": "/human-donors/IGVFDO0411QFOF/"
            },
            {
                "category": "mismatched status",
                "detail": "Preview human donor [IGVFDO0411QFOF](/human-donors/IGVFDO0411QFOF/) has in progress subobject phenotypic feature [fff30f45-9273-47a0-847f-0619e27db9f1](/phenotypic-features/fff30f45-9273-47a0-847f-0619e27db9f1/).",
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        ],
        "NOT_COMPLIANT": [
            {
                "category": "missing sequence specification",
                "detail": "Measurement set [IGVFDS6353IHVX](/measurement-sets/IGVFDS6353IHVX/) has sequence file(s): [IGVFFI3536GNWI](/sequence-files/IGVFFI3536GNWI/), [IGVFFI3880YKKC](/sequence-files/IGVFFI3880YKKC/), [IGVFFI7217UBZT](/sequence-files/IGVFFI7217UBZT/), [IGVFFI9664LPKC](/sequence-files/IGVFFI9664LPKC/), [IGVFFI0859BIAL](/sequence-files/IGVFFI0859BIAL/), [IGVFFI6330RJFP](/sequence-files/IGVFFI6330RJFP/), [IGVFFI8391ZTPF](/sequence-files/IGVFFI8391ZTPF/), [IGVFFI9239NITQ](/sequence-files/IGVFFI9239NITQ/), [IGVFFI6893EUDP](/sequence-files/IGVFFI6893EUDP/), [IGVFFI6183DIKL](/sequence-files/IGVFFI6183DIKL/), [IGVFFI7591BUYA](/sequence-files/IGVFFI7591BUYA/), [IGVFFI7610EAIG](/sequence-files/IGVFFI7610EAIG/), [IGVFFI1338GFFC](/sequence-files/IGVFFI1338GFFC/), [IGVFFI6549RIFT](/sequence-files/IGVFFI6549RIFT/), [IGVFFI7707TWMW](/sequence-files/IGVFFI7707TWMW/), [IGVFFI5503GKMA](/sequence-files/IGVFFI5503GKMA/) which do not have any `seqspecs`. Sequence files in a file set associated with single cell data are expected to link to a sequence specification file.",
                "level": 50,
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                "name": "audit_missing_seqspec",
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            },
            {
                "category": "missing strand specificity",
                "detail": "Measurement set [IGVFDS6353IHVX](/measurement-sets/IGVFDS6353IHVX/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
                "level": 50,
                "level_name": "NOT_COMPLIANT",
                "name": "audit_missing_strand_specificity",
                "path": "/measurement-sets/IGVFDS6353IHVX/"
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        ],
        "WARNING": [
            {
                "category": "missing analysis",
                "detail": "Measurement set [IGVFDS6353IHVX](/measurement-sets/IGVFDS6353IHVX/) is a raw data set with files, but is not listed in any `input_file_sets` for any analysis sets. Raw data sets with files are expected to be associated with at least one analysis set.",
                "level": 40,
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    "award": {
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        "component": "mapping",
        "contact_pi": {
            "@id": "/users/eae4c275-1e07-45e4-ae67-3e437a8680bb/",
            "title": "Ansuman Satpathy"
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        "title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
    },
    "control_for": [],
    "controlled_access": false,
    "creation_timestamp": "2025-03-19T21:43:10.118414+00:00",
    "data_use_limitation_summaries": [
        "No limitations"
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            "accession": "IGVFDO0565OSFT",
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    "onlist_method": "no combination",
    "preferred_assay_title": "10x multiome",
    "protocols": [
        "https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn"
    ],
    "related_multiome_datasets": [
        {
            "@id": "/measurement-sets/IGVFDS3802KJSR/",
            "accession": "IGVFDS3802KJSR",
            "status": "preview"
        }
    ],
    "samples": [
        {
            "@id": "/multiplexed-samples/IGVFSM5142KRLD/",
            "@type": [
                "MultiplexedSample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM5142KRLD",
            "aliases": [
                "igvf:corces_multiplexedSample_RP014_G5"
            ],
            "classifications": [
                "tissue",
                "multiplexed sample"
            ],
            "disease_terms": [
                {
                    "@id": "/phenotype-terms/DOID_0080832/",
                    "status": "in progress",
                    "term_name": "mild cognitive impairment"
                },
                {
                    "@id": "/phenotype-terms/DOID_14330/",
                    "status": "in progress",
                    "term_name": "Parkinson's disease"
                },
                {
                    "@id": "/phenotype-terms/DOID_9246/",
                    "status": "in progress",
                    "term_name": "cerebral amyloid angiopathy"
                },
                {
                    "@id": "/phenotype-terms/MONDO_0004975/",
                    "status": "released",
                    "term_name": "Alzheimer disease"
                }
            ],
            "institutional_certificates": [
                {
                    "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
                    "certificate_identifier": "IP115-05",
                    "controlled_access": false,
                    "status": "in progress"
                }
            ],
            "modifications": [],
            "sample_terms": [
                {
                    "@id": "/sample-terms/UBERON_0001874/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "status": "preview",
                    "summary": "putamen",
                    "term_name": "putamen"
                },
                {
                    "@id": "/sample-terms/UBERON_0002038/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "status": "preview",
                    "summary": "substantia nigra",
                    "term_name": "substantia nigra"
                },
                {
                    "@id": "/sample-terms/UBERON_0002740/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "status": "preview",
                    "summary": "posterior cingulate gyrus",
                    "term_name": "posterior cingulate gyrus"
                },
                {
                    "@id": "/sample-terms/UBERON_0002771/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "status": "preview",
                    "summary": "middle temporal gyrus",
                    "term_name": "middle temporal gyrus"
                }
            ],
            "status": "preview",
            "summary": "multiplexed sample: Homo sapiens (male, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 14 more samples",
            "taxa": "Homo sapiens",
            "treatments": []
        }
    ],
    "schema_version": "26",
    "status": "preview",
    "submitted_by": {
        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
        "title": "Ryan Corces"
    },
    "submitted_files_timestamp": "2025-03-20T21:14:14.021240+00:00",
    "summary": "single-nucleus RNA sequencing assay (10x multiome)",
    "uuid": "243e468a-94b0-402d-a8f8-15dc3f0a032d"
}