Home
Home
Search (⌘K or ⌃K)
Data
Resources / Standards
Data Model
About
Help
Sign In
INDEXED
Home
/
MeasurementSet
/
IGVFDS6327MRII
IGVFDS6327MRII
released
GRU
Json view
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to endodermal cell for 2 days (cellular sub pool: SS-PKR 176)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
buenrostro-bernstein:scATAC Lib 421
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
36 items
1
2
3
4
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0016OMEF
fastq
reads
I1
8641
Barcode index
IGVFFI1418KROO
Illumina NovaSeq X
22LMVNLT4
1.3 GB
Jason Buenrostro, Broad
validated
IGVFFI0127KMJK
fastq
reads
R2
9025
Read 2
IGVFFI7263KALA
Illumina NovaSeq X
22LMVNLT4
2.1 GB
Jason Buenrostro, Broad
validated
IGVFFI0519EDZP
fastq
reads
R1
3900
Read 1
IGVFFI8841ICDN
Illumina NovaSeq X
22523KLT3
2.6 GB
Jason Buenrostro, Broad
validated
IGVFFI0851GPWI
fastq
reads
R2
3900
Read 2
IGVFFI8841ICDN
Illumina NovaSeq X
22523KLT3
1.3 GB
Jason Buenrostro, Broad
validated
IGVFFI1019QCHI
fastq
reads
I1
4375
Barcode index
IGVFFI8361JATG
Illumina NovaSeq 6000
H75F7DSX5
2.0 GB
Jason Buenrostro, Broad
validated
IGVFFI1273IEWC
fastq
reads
R1
8449
Read 1
IGVFFI7931PBZG
Illumina NovaSeq X
22LMVNLT4
2.3 GB
Jason Buenrostro, Broad
validated
IGVFFI1497FWEV
fastq
reads
I1
8449
Barcode index
IGVFFI7931PBZG
Illumina NovaSeq X
22LMVNLT4
1.3 GB
Jason Buenrostro, Broad
validated
IGVFFI1532XIUO
fastq
reads
R1
9121
Read 1
IGVFFI7223FRXW
Illumina NovaSeq X
22LMVNLT4
2.1 GB
Jason Buenrostro, Broad
validated
IGVFFI1993MQGT
fastq
reads
I1
8929
Barcode index
IGVFFI8083XXLR
Illumina NovaSeq X
22LMVNLT4
1.2 GB
Jason Buenrostro, Broad
validated
IGVFFI2140PPTS
fastq
reads
I1
8833
Barcode index
IGVFFI1292TGUB
Illumina NovaSeq X
22LMVNLT4
1.3 GB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM7612HZVW
InVitroSystem
induced pluripotent stem cell
Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to endodermal cell for 2 days (cellular sub pool: SS-PKR 176)
Donors
100 items
1
2
3
4
5
10
Accession
Aliases
Sex
Taxa
IGVFDO0143YSWQ
buenrostro-bernstein:Donor 1860
unspecified
Homo sapiens
IGVFDO0144AKUR
buenrostro-bernstein:Donor 1850
unspecified
Homo sapiens
IGVFDO0166JLWT
buenrostro-bernstein:Donor 1816
unspecified
Homo sapiens
IGVFDO0186ZZOL
buenrostro-bernstein:Donor 1862
unspecified
Homo sapiens
IGVFDO0233FJJF
buenrostro-bernstein:Donor 1834
unspecified
Homo sapiens
IGVFDO0273LMQQ
buenrostro-bernstein:Donor 1876
unspecified
Homo sapiens
IGVFDO0285FFEG
buenrostro-bernstein:Donor 1828
unspecified
Homo sapiens
IGVFDO0392YIJG
buenrostro-bernstein:Donor 1892
unspecified
Homo sapiens
IGVFDO0436YOXD
buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
IGVFDO0452ROLO
buenrostro-bernstein:Donor 1867
unspecified
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS1445KWZM
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 252
Jason Buenrostro, Broad