Home

IGVFDS6323NFTV

preview
This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (male, 24.0 years) peripheral blood mononuclear cell; Homo sapiens (male, 52.0 years) peripheral blood mononuclear cell; ... and 18 more samples
Protocols
Aliases
jimmie-ye:XX14-SC4_snATAC

Sequencing Results (Illumina)

16 items
Read Names
fastq
reads
R3
198
Read 2
12 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
197
1.8 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
197
Barcode index
4.3 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
198
Read 1
7.6 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
199
1.8 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
199
Barcode index
4.3 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
200
Barcode index
4.3 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
197
Read 2
12 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
199
Read 1
7.7 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
200
Read 1
7.6 GB
Jimmie Ye, UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male, 24.0 years) peripheral blood mononuclear cell; Homo sapiens (male, 52.0 years) peripheral blood mononuclear cell; ... and 18 more samples

Donors

20 items
Aliases
  • jimmie-ye:donor_196
female
Homo sapiens
  • jimmie-ye:donor_241
male
Homo sapiens
  • jimmie-ye:donor_276
male
Homo sapiens
  • jimmie-ye:donor_225
female
Homo sapiens
  • jimmie-ye:donor_259
female
Homo sapiens
  • jimmie-ye:donor_251
male
Homo sapiens
  • jimmie-ye:donor_67
female
Homo sapiens
  • jimmie-ye:donor_255
male
Homo sapiens
  • jimmie-ye:donor_249
female
Homo sapiens
  • jimmie-ye:donor_237
female
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • jimmie-ye:XX14-SC4_snRNA
Jimmie Ye, UCSF

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Jimmie Ye, UCSF