{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS6307SCID",
"aliases": [
"bradley-bernstein:scATAC Lib 1",
"buenrostro-bernstein:scATAC Lib 1"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"status": "released",
"term_name": "single-cell ATAC-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM5807QDIF](/primary-cells/IGVFSM5807QDIF/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM5807QDIF/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS6307SCID](/measurement-sets/IGVFDS6307SCID/) has sequence file(s): [IGVFFI1402YRAT](/sequence-files/IGVFFI1402YRAT/), [IGVFFI5242QYXM](/sequence-files/IGVFFI5242QYXM/), [IGVFFI6518YGCO](/sequence-files/IGVFFI6518YGCO/), [IGVFFI6067YUCY](/sequence-files/IGVFFI6067YUCY/), [IGVFFI4255KHOS](/sequence-files/IGVFFI4255KHOS/), [IGVFFI7675JXFS](/sequence-files/IGVFFI7675JXFS/), [IGVFFI8068QNQC](/sequence-files/IGVFFI8068QNQC/), [IGVFFI4014RUCU](/sequence-files/IGVFFI4014RUCU/), [IGVFFI8039PVKX](/sequence-files/IGVFFI8039PVKX/), [IGVFFI3358TLGJ](/sequence-files/IGVFFI3358TLGJ/), [IGVFFI1586XEUZ](/sequence-files/IGVFFI1586XEUZ/), [IGVFFI5038EEIZ](/sequence-files/IGVFFI5038EEIZ/), [IGVFFI7762VJTN](/sequence-files/IGVFFI7762VJTN/), [IGVFFI7601PNUZ](/sequence-files/IGVFFI7601PNUZ/), [IGVFFI0802TTOZ](/sequence-files/IGVFFI0802TTOZ/), [IGVFFI8245CIXW](/sequence-files/IGVFFI8245CIXW/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS6307SCID/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS6307SCID](/measurement-sets/IGVFDS6307SCID/) has an `assay_term` of single-cell ATAC-seq but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS6307SCID/"
}
]
},
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"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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}
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"bradley-bernstein:BioSam 4563_SS-PKR 1",
"buenrostro-bernstein:BioSam 4563_SS-PKR 1"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 1), male, Homo sapiens (26 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:23:17.032885+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "50091f61-a15f-4b8e-be58-eab5ac2f5493"
}