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IGVFDS6299DIZF

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens bone marrow cell; Homo sapiens (female) bone marrow cell; ... and 20 more samples
Protocols
Aliases
maya-kasowski:10X_multiome_snATAC
Attribution
Maya Kasowski, Stanford

Sequencing Results (Illumina)

16 items
Read Names
fastq
reads
R1
1
Read 1
2
51 GB
Maya Kasowski, Stanford
validated
fastq
reads
R3
1
Read 2
1
87 GB
Maya Kasowski, Stanford
validated
fastq
reads
I1
1
Barcode index
1
8.8 GB
Maya Kasowski, Stanford
validated
fastq
reads
R3
1
Read 2
2
50 GB
Maya Kasowski, Stanford
validated
fastq
reads
I1
1
Barcode index
2
5.1 GB
Maya Kasowski, Stanford
validated
fastq
reads
R3
1
Read 2
3
48 GB
Maya Kasowski, Stanford
validated
fastq
reads
I1
1
Barcode index
4
4.4 GB
Maya Kasowski, Stanford
validated
fastq
reads
R3
1
Read 2
4
43 GB
Maya Kasowski, Stanford
validated
fastq
reads
R2
1
Barcode index
3
12 GB
Maya Kasowski, Stanford
validated
fastq
reads
R2
1
Barcode index
2
13 GB
Maya Kasowski, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens bone marrow cell; Homo sapiens (female) bone marrow cell; ... and 20 more samples

Donors

22 items
Aliases
  • maya-kasowski:donor_4238
male
Homo sapiens
  • maya-kasowski:donor_4463
female
Homo sapiens
  • maya-kasowski:donor_4371
male
Homo sapiens
  • maya-kasowski:donor_4089
unspecified
Homo sapiens
  • maya-kasowski:donor_4352
female
Homo sapiens
  • maya-kasowski:donor_4048
unspecified
Homo sapiens
  • maya-kasowski:donor_4271
unspecified
Homo sapiens
  • maya-kasowski:donor_4146
female
Homo sapiens
  • maya-kasowski:donor_4080
female
Homo sapiens
  • maya-kasowski:donor_4522
male
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • maya-kasowski:10X_multiome_snRNA
Maya Kasowski, Stanford