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INDEXED
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MeasurementSet
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IGVFDS6289YQBN
IGVFDS6289YQBN
released
Json view
File Set Type
experimental data
Summary
single-cell RNA sequencing assay (SHARE-seq)
Assay Term
single-cell RNA sequencing assay
Sample Summaries
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 436)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
buenrostro-bernstein:scRNA Lib 601
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
4 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0846GWZX
fastq
reads
R2
3818
Read 2, Barcode index
IGVFFI4735KTCJ
Illumina NovaSeq 6000
H22KKDRX5
1.8 GB
Jason Buenrostro, Broad
validated
IGVFFI4040KVJA
fastq
reads
R1
3842
Read 1
IGVFFI9557CSJM
Illumina NovaSeq 6000
H22KKDRX5
1.1 GB
Jason Buenrostro, Broad
validated
IGVFFI4188BVSG
fastq
reads
R1
3818
Read 1
IGVFFI4735KTCJ
Illumina NovaSeq 6000
H22KKDRX5
1.1 GB
Jason Buenrostro, Broad
validated
IGVFFI8647WTOX
fastq
reads
R2
3842
Read 2, Barcode index
IGVFFI9557CSJM
Illumina NovaSeq 6000
H22KKDRX5
1.9 GB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM4321WQTD
Tissue
brain
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 436)
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO9446AKYF
buenrostro-bernstein:Donor 2047
unspecified
Mus musculus
Related Multiome Datasets
4 items
Accession
Type
Summary
Aliases
Lab
IGVFDS4752BWME
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 611
Jason Buenrostro, Broad
IGVFDS5083GBBF
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
buenrostro-bernstein:scATAC Lib 1270
Jason Buenrostro, Broad
IGVFDS5177YHMM
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 599
Jason Buenrostro, Broad
IGVFDS7571FXYP
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 600
Jason Buenrostro, Broad