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IGVFDS6271MTZX

released
File Set Type
experimental data
Summary
lentiMPRA integrating a reporter library targeting candidate cis-regulatory elements genome-wide
Description
HepG2 RNA count data of replicate 1
Assay Term
massively parallel reporter assay
Sample Summaries
  • Homo sapiens (male) HepG2 pooled cell specimen transduced (lentivirus) with a reporter library
Protocols
Submitter Comment
rep1
Attribution
Nadav Ahituv, UCSF

Sequencing Results (Illumina)

9 items
Read Names
fastq
reads
R3
2
Barcode reverse
1.4 GB
Nadav Ahituv, UCSF
validated
fastq
reads
R3
3
Barcode reverse
2.1 GB
Nadav Ahituv, UCSF
validated
fastq
reads
R3
1
Barcode reverse
2.4 GB
Nadav Ahituv, UCSF
validated
fastq
reads
R1
2
Barcode forward
1.4 GB
Nadav Ahituv, UCSF
validated
fastq
reads
R2
1
UMI
2.5 GB
Nadav Ahituv, UCSF
validated
fastq
reads
R2
3
UMI
2.2 GB
Nadav Ahituv, UCSF
validated
fastq
reads
R1
3
Barcode forward
2.1 GB
Nadav Ahituv, UCSF
validated
fastq
reads
R1
1
Barcode forward
2.4 GB
Nadav Ahituv, UCSF
validated
fastq
reads
R2
2
UMI
1.5 GB
Nadav Ahituv, UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens (male) HepG2 pooled cell specimen transduced (lentivirus) with a reporter library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_HepG2
male
Homo sapiens

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
reporter library targeting candidate cis-regulatory elements genome-wide

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
lentiMPRA: reporter experiment, reporter experiment barcode
Nadav Ahituv, UCSF

Auxiliary Datasets

1 item
Accession
Type
Summary
Files
Aliases
Lab
AuxiliarySet
quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting candidate cis-regulatory elements genome-wide
Nadav Ahituv, UCSF