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IGVFDS6182VLTG
IGVFDS6182VLTG
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File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP001_G1_ATAC
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0311MJIA
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223JL2LT3
7
2.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2117TVYH
fastq
reads
I1
1
Illumina NovaSeq X
223JL2LT3
5
501 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2129MNTF
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JL2LT3
7
2.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2369LESX
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223JL2LT3
8
1.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2665PGOA
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223JL2LT3
8
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2765VQSJ
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JL2LT3
5
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3314WZPY
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223JL2LT3
5
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3372MPLZ
fastq
reads
I1
1
Illumina NovaSeq X
223JL2LT3
8
454 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3718EILP
fastq
reads
I1
1
Illumina NovaSeq X
223JL2LT3
7
481 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3828PGTF
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223JL2LT3
6
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM7927MDCD
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0112XZXT
igvf:corces_donor_BANN0218
male
Homo sapiens
IGVFDO0411QFOF
igvf:corces_donor_BANN1750
male
Homo sapiens
IGVFDO1302YEPX
igvf:corces_donor_BANN0215
female
Homo sapiens
IGVFDO1469WVVS
igvf:corces_donor_BANN1063
male
Homo sapiens
IGVFDO4191KJBR
igvf:corces_donor_BANN0129
male
Homo sapiens
IGVFDO4825ZGIS
igvf:corces_donor_BANN2057
male
Homo sapiens
IGVFDO6000JDZW
igvf:corces_donor_BANN1858
male
Homo sapiens
IGVFDO6316TGCK
igvf:corces_donor_BANN1814
male
Homo sapiens
IGVFDO6380POHE
igvf:corces_donor_BANN0124
male
Homo sapiens
IGVFDO6513APBX
igvf:corces_donor_BANN0210
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS9948CJNC
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP001_G1_RNA
Ryan Corces, Gladstone Institute UCSF