{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS6156CSUO/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS6156CSUO",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"assay_slims": [
"chromatin accessibility"
],
"status": "released",
"term_name": "single-cell ATAC-seq"
},
"audit": {
"WARNING": [
{
"category": "missing analysis",
"detail": "Measurement set [IGVFDS6156CSUO](/measurement-sets/IGVFDS6156CSUO/) is a raw data set with files, but is not listed in any `input_file_sets` for any analysis sets. Raw data sets with files are expected to be associated with at least one analysis set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_input_for",
"path": "/measurement-sets/IGVFDS6156CSUO/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping",
"contact_pi": {
"@id": "/users/eae4c275-1e07-45e4-ae67-3e437a8680bb/",
"title": "Ansuman Satpathy"
},
"title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
},
"control_for": [],
"controlled_access": true,
"creation_timestamp": "2025-03-05T19:51:08.603876+00:00",
"data_use_limitation_summaries": [
"GRU-PUB"
],
"donors": [
{
"@id": "/human-donors/IGVFDO5335GPUE/",
"accession": "IGVFDO5335GPUE",
"aliases": [
"leif-ludwig:donor2312527008"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/configuration-files/IGVFFI9250CXZO/",
"accession": "IGVFFI9250CXZO",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_L005_seqspec"
],
"content_type": "seqspec",
"creation_timestamp": "2025-03-19T16:12:22.825781+00:00",
"file_format": "yaml",
"file_size": 1492,
"href": "/configuration-files/IGVFFI9250CXZO/@@download/IGVFFI9250CXZO.yaml.gz",
"md5sum": "7a09c766116ba3345e77e8317e2fc9f8",
"s3_uri": "s3://igvf-files/2025/03/19/9315b928-f08a-410b-90c6-319c7ce7ff7c/IGVFFI9250CXZO.yaml.gz",
"status": "preview",
"submitted_file_name": "/Users/fermel/work/IGVF/seqspecs_samples_6-15/measurement2312527008_scATAC_L005.spec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI0403OCOR/",
"accession": "IGVFFI0403OCOR",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_L006_seqspec"
],
"content_type": "seqspec",
"creation_timestamp": "2025-03-19T16:12:35.168037+00:00",
"file_format": "yaml",
"file_size": 1493,
"href": "/configuration-files/IGVFFI0403OCOR/@@download/IGVFFI0403OCOR.yaml.gz",
"md5sum": "4e59bd79e3f6a12bd93d1a573b276799",
"s3_uri": "s3://igvf-files/2025/03/19/f448db52-c452-4c54-950e-106a6e0adb3b/IGVFFI0403OCOR.yaml.gz",
"status": "preview",
"submitted_file_name": "/Users/fermel/work/IGVF/seqspecs_samples_6-15/measurement2312527008_scATAC_L006.spec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI3072DDUK/",
"accession": "IGVFFI3072DDUK",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_L002_seqspec"
],
"content_type": "seqspec",
"creation_timestamp": "2025-03-19T16:12:26.713558+00:00",
"file_format": "yaml",
"file_size": 1491,
"href": "/configuration-files/IGVFFI3072DDUK/@@download/IGVFFI3072DDUK.yaml.gz",
"md5sum": "e860c5da5505572f8cd60607745a26af",
"s3_uri": "s3://igvf-files/2025/03/19/880defc4-1bfe-48ae-b1a7-7073255baea2/IGVFFI3072DDUK.yaml.gz",
"status": "preview",
"submitted_file_name": "/Users/fermel/work/IGVF/seqspecs_samples_6-15/measurement2312527008_scATAC_L002.spec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI7092GEKL/",
"accession": "IGVFFI7092GEKL",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_L008_seqspec"
],
"content_type": "seqspec",
"creation_timestamp": "2025-03-19T16:12:24.974162+00:00",
"file_format": "yaml",
"file_size": 1493,
"href": "/configuration-files/IGVFFI7092GEKL/@@download/IGVFFI7092GEKL.yaml.gz",
"md5sum": "2bd66001a2c591b7c386e67eb0fe398f",
"s3_uri": "s3://igvf-files/2025/03/19/3c0d03f0-8383-4745-9356-622da6ec6696/IGVFFI7092GEKL.yaml.gz",
"status": "preview",
"submitted_file_name": "/Users/fermel/work/IGVF/seqspecs_samples_6-15/measurement2312527008_scATAC_L008.spec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI2539QJSS/",
"accession": "IGVFFI2539QJSS",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_L007_seqspec"
],
"content_type": "seqspec",
"creation_timestamp": "2025-03-19T16:12:28.428651+00:00",
"file_format": "yaml",
"file_size": 1492,
"href": "/configuration-files/IGVFFI2539QJSS/@@download/IGVFFI2539QJSS.yaml.gz",
"md5sum": "5f150b6916cac07810a94e7b7396db87",
"s3_uri": "s3://igvf-files/2025/03/19/3745ce4f-6793-4d36-bd5f-480ef9037b47/IGVFFI2539QJSS.yaml.gz",
"status": "preview",
"submitted_file_name": "/Users/fermel/work/IGVF/seqspecs_samples_6-15/measurement2312527008_scATAC_L007.spec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI1697JSJE/",
"accession": "IGVFFI1697JSJE",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_L003_seqspec"
],
"content_type": "seqspec",
"creation_timestamp": "2025-03-19T16:12:32.090044+00:00",
"file_format": "yaml",
"file_size": 1492,
"href": "/configuration-files/IGVFFI1697JSJE/@@download/IGVFFI1697JSJE.yaml.gz",
"md5sum": "72f49289867cf70ed7484cc30413a061",
"s3_uri": "s3://igvf-files/2025/03/19/0be7d849-42ac-4cd3-bf65-65cd2f052517/IGVFFI1697JSJE.yaml.gz",
"status": "preview",
"submitted_file_name": "/Users/fermel/work/IGVF/seqspecs_samples_6-15/measurement2312527008_scATAC_L003.spec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI5747UZXR/",
"accession": "IGVFFI5747UZXR",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_L001_seqspec"
],
"content_type": "seqspec",
"creation_timestamp": "2025-03-19T16:12:33.655014+00:00",
"file_format": "yaml",
"file_size": 1494,
"href": "/configuration-files/IGVFFI5747UZXR/@@download/IGVFFI5747UZXR.yaml.gz",
"md5sum": "f6240daaf7a694a0a91a65a19a5fee36",
"s3_uri": "s3://igvf-files/2025/03/19/20328e2c-9430-4579-87e8-8b49ec9d3c6c/IGVFFI5747UZXR.yaml.gz",
"status": "preview",
"submitted_file_name": "/Users/fermel/work/IGVF/seqspecs_samples_6-15/measurement2312527008_scATAC_L001.spec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI8340ZQVX/",
"accession": "IGVFFI8340ZQVX",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_L004_seqspec"
],
"content_type": "seqspec",
"creation_timestamp": "2025-03-19T16:12:29.960106+00:00",
"file_format": "yaml",
"file_size": 1493,
"href": "/configuration-files/IGVFFI8340ZQVX/@@download/IGVFFI8340ZQVX.yaml.gz",
"md5sum": "488a1fbb46f16ec3df67ddf6e1076559",
"s3_uri": "s3://igvf-files/2025/03/19/8c7f010e-317f-474d-89d4-e7f59aac46ac/IGVFFI8340ZQVX.yaml.gz",
"status": "preview",
"submitted_file_name": "/Users/fermel/work/IGVF/seqspecs_samples_6-15/measurement2312527008_scATAC_L004.spec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2421CEOA/",
"accession": "IGVFFI2421CEOA",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_R1_005"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-12T21:55:17.122973+00:00",
"file_format": "fastq",
"file_size": 2740059584,
"href": "/sequence-files/IGVFFI2421CEOA/@@download/IGVFFI2421CEOA.fastq.gz",
"md5sum": "e4d23556dd47777bed0bb73895945e1b",
"s3_uri": "s3://igvf-restricted-files/2025/03/12/397323c8-b1fa-4b01-ae0c-58e3679a249b/IGVFFI2421CEOA.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022841/",
"status": "released",
"term_name": "Illumina NovaSeq X Plus"
},
"status": "preview",
"submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2312527008_Multiome_ATAC_S10_L005_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8842AUAG/",
"accession": "IGVFFI8842AUAG",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_R1_002"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-12T21:57:03.109371+00:00",
"file_format": "fastq",
"file_size": 2786813478,
"href": "/sequence-files/IGVFFI8842AUAG/@@download/IGVFFI8842AUAG.fastq.gz",
"md5sum": "98b3ae1268ac4a241a9a2717d69c0031",
"s3_uri": "s3://igvf-restricted-files/2025/03/12/56801e9d-42bf-4f84-8022-3d6f4bb3cbd5/IGVFFI8842AUAG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022841/",
"status": "released",
"term_name": "Illumina NovaSeq X Plus"
},
"status": "preview",
"submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2312527008_Multiome_ATAC_S10_L002_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0010KNBF/",
"accession": "IGVFFI0010KNBF",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_R2_001"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-12T22:02:00.233856+00:00",
"file_format": "fastq",
"file_size": 864188799,
"href": "/sequence-files/IGVFFI0010KNBF/@@download/IGVFFI0010KNBF.fastq.gz",
"md5sum": "811595dfdaf9912b858665603806eb51",
"s3_uri": "s3://igvf-restricted-files/2025/03/12/66dccae5-be76-455d-b0dd-7ee6504bc22f/IGVFFI0010KNBF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022841/",
"status": "released",
"term_name": "Illumina NovaSeq X Plus"
},
"status": "preview",
"submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2312527008_Multiome_ATAC_S10_L001_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3910RSJQ/",
"accession": "IGVFFI3910RSJQ",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_R2_006"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-12T22:03:09.182675+00:00",
"file_format": "fastq",
"file_size": 857937564,
"href": "/sequence-files/IGVFFI3910RSJQ/@@download/IGVFFI3910RSJQ.fastq.gz",
"md5sum": "90e4038979a16b58bddd7136e8082292",
"s3_uri": "s3://igvf-restricted-files/2025/03/12/6f426e59-4458-4cc5-864b-2b8766ce5136/IGVFFI3910RSJQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022841/",
"status": "released",
"term_name": "Illumina NovaSeq X Plus"
},
"status": "preview",
"submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2312527008_Multiome_ATAC_S10_L006_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5306RFCB/",
"accession": "IGVFFI5306RFCB",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_R1_007"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-12T21:57:56.280597+00:00",
"file_format": "fastq",
"file_size": 2732618881,
"href": "/sequence-files/IGVFFI5306RFCB/@@download/IGVFFI5306RFCB.fastq.gz",
"md5sum": "8a7b0596e610a203840757e863596f7a",
"s3_uri": "s3://igvf-restricted-files/2025/03/12/31fd92a8-692b-4541-8ced-0720a4cc25c1/IGVFFI5306RFCB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022841/",
"status": "released",
"term_name": "Illumina NovaSeq X Plus"
},
"status": "preview",
"submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2312527008_Multiome_ATAC_S10_L007_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0102TQWP/",
"accession": "IGVFFI0102TQWP",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_R2_002"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-12T22:04:19.630494+00:00",
"file_format": "fastq",
"file_size": 870504335,
"href": "/sequence-files/IGVFFI0102TQWP/@@download/IGVFFI0102TQWP.fastq.gz",
"md5sum": "0913f21c656fddacd6db1f7a18a5b677",
"s3_uri": "s3://igvf-restricted-files/2025/03/12/4633372c-e134-40a2-acde-63997f6a9d1b/IGVFFI0102TQWP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022841/",
"status": "released",
"term_name": "Illumina NovaSeq X Plus"
},
"status": "preview",
"submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2312527008_Multiome_ATAC_S10_L002_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7049CDYY/",
"accession": "IGVFFI7049CDYY",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_R2_004"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-12T22:04:43.125812+00:00",
"file_format": "fastq",
"file_size": 853386675,
"href": "/sequence-files/IGVFFI7049CDYY/@@download/IGVFFI7049CDYY.fastq.gz",
"md5sum": "0eadc7fa5eec5dc3e06a208656d8195a",
"s3_uri": "s3://igvf-restricted-files/2025/03/12/3e07fc3f-6407-40d5-b6df-e42095e49c0b/IGVFFI7049CDYY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022841/",
"status": "released",
"term_name": "Illumina NovaSeq X Plus"
},
"status": "preview",
"submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2312527008_Multiome_ATAC_S10_L004_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6531BGTB/",
"accession": "IGVFFI6531BGTB",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_R3_005"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-12T22:08:20.102229+00:00",
"file_format": "fastq",
"file_size": 2656248175,
"href": "/sequence-files/IGVFFI6531BGTB/@@download/IGVFFI6531BGTB.fastq.gz",
"md5sum": "ae8f78516c86d66aee3bd87f49c5bbc1",
"s3_uri": "s3://igvf-restricted-files/2025/03/12/06143880-9d8d-44bc-80c9-5c8a44c5d3a6/IGVFFI6531BGTB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022841/",
"status": "released",
"term_name": "Illumina NovaSeq X Plus"
},
"status": "preview",
"submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2312527008_Multiome_ATAC_S10_L005_R3_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1606VRYD/",
"accession": "IGVFFI1606VRYD",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_R3_002"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-12T22:09:10.121703+00:00",
"file_format": "fastq",
"file_size": 2706454125,
"href": "/sequence-files/IGVFFI1606VRYD/@@download/IGVFFI1606VRYD.fastq.gz",
"md5sum": "77ee15e8b613f50526445839abee4df0",
"s3_uri": "s3://igvf-restricted-files/2025/03/12/d750dce0-6fc9-4fd5-a478-65ec4ffd1c1a/IGVFFI1606VRYD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022841/",
"status": "released",
"term_name": "Illumina NovaSeq X Plus"
},
"status": "preview",
"submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2312527008_Multiome_ATAC_S10_L002_R3_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0861GBWD/",
"accession": "IGVFFI0861GBWD",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_R1_008"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-12T21:56:09.910378+00:00",
"file_format": "fastq",
"file_size": 2728446049,
"href": "/sequence-files/IGVFFI0861GBWD/@@download/IGVFFI0861GBWD.fastq.gz",
"md5sum": "c2a0f131f1dd2a7449f9736e12aa6d55",
"s3_uri": "s3://igvf-restricted-files/2025/03/12/deb0cdb5-a0e4-4237-b1d9-f682b12392f0/IGVFFI0861GBWD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022841/",
"status": "released",
"term_name": "Illumina NovaSeq X Plus"
},
"status": "preview",
"submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2312527008_Multiome_ATAC_S10_L008_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2665SEHK/",
"accession": "IGVFFI2665SEHK",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_R3_008"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-12T22:05:08.442967+00:00",
"file_format": "fastq",
"file_size": 2639395631,
"href": "/sequence-files/IGVFFI2665SEHK/@@download/IGVFFI2665SEHK.fastq.gz",
"md5sum": "668399848851a74cf5c1c48add2b9f38",
"s3_uri": "s3://igvf-restricted-files/2025/03/12/1836ac49-1109-4e91-a359-cfd6b7538cf3/IGVFFI2665SEHK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022841/",
"status": "released",
"term_name": "Illumina NovaSeq X Plus"
},
"status": "preview",
"submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2312527008_Multiome_ATAC_S10_L008_R3_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9216QPUR/",
"accession": "IGVFFI9216QPUR",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_R3_004"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-12T22:06:41.084480+00:00",
"file_format": "fastq",
"file_size": 2651460592,
"href": "/sequence-files/IGVFFI9216QPUR/@@download/IGVFFI9216QPUR.fastq.gz",
"md5sum": "7663aba9ed7626868571eb244963e473",
"s3_uri": "s3://igvf-restricted-files/2025/03/12/2d21a281-259a-4cd1-8a4b-20f0de847037/IGVFFI9216QPUR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022841/",
"status": "released",
"term_name": "Illumina NovaSeq X Plus"
},
"status": "preview",
"submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2312527008_Multiome_ATAC_S10_L004_R3_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8685WDHH/",
"accession": "IGVFFI8685WDHH",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_R2_008"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-12T22:02:44.629828+00:00",
"file_format": "fastq",
"file_size": 845080669,
"href": "/sequence-files/IGVFFI8685WDHH/@@download/IGVFFI8685WDHH.fastq.gz",
"md5sum": "9d340f224e6c45d9fe18ff2610edec94",
"s3_uri": "s3://igvf-restricted-files/2025/03/12/3c0e5e67-b1af-4f27-9e5f-242fa0ad87c2/IGVFFI8685WDHH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022841/",
"status": "released",
"term_name": "Illumina NovaSeq X Plus"
},
"status": "preview",
"submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2312527008_Multiome_ATAC_S10_L008_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6325FZEW/",
"accession": "IGVFFI6325FZEW",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_R1_004"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-12T21:58:46.069582+00:00",
"file_format": "fastq",
"file_size": 2742385150,
"href": "/sequence-files/IGVFFI6325FZEW/@@download/IGVFFI6325FZEW.fastq.gz",
"md5sum": "aea8c951c3d27362caa6b91618baa3d9",
"s3_uri": "s3://igvf-restricted-files/2025/03/12/15d46659-54d4-48db-9501-671f85b9c0ad/IGVFFI6325FZEW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022841/",
"status": "released",
"term_name": "Illumina NovaSeq X Plus"
},
"status": "preview",
"submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2312527008_Multiome_ATAC_S10_L004_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9460VQIK/",
"accession": "IGVFFI9460VQIK",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_R1_001"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-12T22:00:25.197728+00:00",
"file_format": "fastq",
"file_size": 2777588432,
"href": "/sequence-files/IGVFFI9460VQIK/@@download/IGVFFI9460VQIK.fastq.gz",
"md5sum": "39b25d1ccf008e47443540854d81c7e6",
"s3_uri": "s3://igvf-restricted-files/2025/03/12/3cf621c8-2079-4931-af91-097412a877c4/IGVFFI9460VQIK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022841/",
"status": "released",
"term_name": "Illumina NovaSeq X Plus"
},
"status": "preview",
"submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2312527008_Multiome_ATAC_S10_L001_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6776STOD/",
"accession": "IGVFFI6776STOD",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_R2_005"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-12T22:02:21.605623+00:00",
"file_format": "fastq",
"file_size": 850858046,
"href": "/sequence-files/IGVFFI6776STOD/@@download/IGVFFI6776STOD.fastq.gz",
"md5sum": "514baef360eb0933116cbd05c5824014",
"s3_uri": "s3://igvf-restricted-files/2025/03/12/b6ecd1ce-aeef-4551-b868-88034dfe9a80/IGVFFI6776STOD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022841/",
"status": "released",
"term_name": "Illumina NovaSeq X Plus"
},
"status": "preview",
"submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2312527008_Multiome_ATAC_S10_L005_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1610XDEE/",
"accession": "IGVFFI1610XDEE",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_R1_003"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-12T21:59:37.174244+00:00",
"file_format": "fastq",
"file_size": 2528831257,
"href": "/sequence-files/IGVFFI1610XDEE/@@download/IGVFFI1610XDEE.fastq.gz",
"md5sum": "58be6a2c370c633f7b75f63138969735",
"s3_uri": "s3://igvf-restricted-files/2025/03/12/19cecd63-70b4-480c-aea9-60a135ae8fb5/IGVFFI1610XDEE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022841/",
"status": "released",
"term_name": "Illumina NovaSeq X Plus"
},
"status": "preview",
"submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2312527008_Multiome_ATAC_S10_L003_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5534IQWR/",
"accession": "IGVFFI5534IQWR",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_R1_006"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-12T22:01:17.250632+00:00",
"file_format": "fastq",
"file_size": 2763970573,
"href": "/sequence-files/IGVFFI5534IQWR/@@download/IGVFFI5534IQWR.fastq.gz",
"md5sum": "af9b7715fd6a2dc98fb10f09f9b76ed7",
"s3_uri": "s3://igvf-restricted-files/2025/03/12/5020a6df-2d2f-46cd-811c-3dd39fb39f0d/IGVFFI5534IQWR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022841/",
"status": "released",
"term_name": "Illumina NovaSeq X Plus"
},
"status": "preview",
"submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2312527008_Multiome_ATAC_S10_L006_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1167EEXR/",
"accession": "IGVFFI1167EEXR",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_R2_003"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-12T22:03:56.638235+00:00",
"file_format": "fastq",
"file_size": 798663264,
"href": "/sequence-files/IGVFFI1167EEXR/@@download/IGVFFI1167EEXR.fastq.gz",
"md5sum": "82dfda3bd743bdc1efb24b2358429062",
"s3_uri": "s3://igvf-restricted-files/2025/03/12/bb433832-943a-41b6-aea1-cf16534405dd/IGVFFI1167EEXR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022841/",
"status": "released",
"term_name": "Illumina NovaSeq X Plus"
},
"status": "preview",
"submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2312527008_Multiome_ATAC_S10_L003_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8163TVJZ/",
"accession": "IGVFFI8163TVJZ",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_R3_003"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-12T22:05:55.237106+00:00",
"file_format": "fastq",
"file_size": 2468267442,
"href": "/sequence-files/IGVFFI8163TVJZ/@@download/IGVFFI8163TVJZ.fastq.gz",
"md5sum": "85239fe4dc18f28de5149a19c7c4c15e",
"s3_uri": "s3://igvf-restricted-files/2025/03/12/b7c459bd-a164-49ef-ace5-f1858f582682/IGVFFI8163TVJZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022841/",
"status": "released",
"term_name": "Illumina NovaSeq X Plus"
},
"status": "preview",
"submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2312527008_Multiome_ATAC_S10_L003_R3_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3851QYPZ/",
"accession": "IGVFFI3851QYPZ",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_R3_006"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-12T22:10:01.011777+00:00",
"file_format": "fastq",
"file_size": 2679724258,
"href": "/sequence-files/IGVFFI3851QYPZ/@@download/IGVFFI3851QYPZ.fastq.gz",
"md5sum": "9dc84ff0a13998f91b6621f4043ee30a",
"s3_uri": "s3://igvf-restricted-files/2025/03/12/f5b74f39-d3fa-4025-8a6a-e375346dab1c/IGVFFI3851QYPZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022841/",
"status": "released",
"term_name": "Illumina NovaSeq X Plus"
},
"status": "preview",
"submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2312527008_Multiome_ATAC_S10_L006_R3_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8735MOKU/",
"accession": "IGVFFI8735MOKU",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_R2_007"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-12T22:03:33.759682+00:00",
"file_format": "fastq",
"file_size": 847700976,
"href": "/sequence-files/IGVFFI8735MOKU/@@download/IGVFFI8735MOKU.fastq.gz",
"md5sum": "01b83d7eb53a75f3c9789f2c8d3b7dc1",
"s3_uri": "s3://igvf-restricted-files/2025/03/12/152539c7-1abb-4635-88a9-61a593ab2588/IGVFFI8735MOKU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022841/",
"status": "released",
"term_name": "Illumina NovaSeq X Plus"
},
"status": "preview",
"submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2312527008_Multiome_ATAC_S10_L007_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6284MAII/",
"accession": "IGVFFI6284MAII",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_R3_001"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-12T22:07:30.811651+00:00",
"file_format": "fastq",
"file_size": 2688450268,
"href": "/sequence-files/IGVFFI6284MAII/@@download/IGVFFI6284MAII.fastq.gz",
"md5sum": "e98dca5d792aa614a905874feaca9684",
"s3_uri": "s3://igvf-restricted-files/2025/03/12/0885e964-212f-4de7-81f0-f8dfd401c3ee/IGVFFI6284MAII.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022841/",
"status": "released",
"term_name": "Illumina NovaSeq X Plus"
},
"status": "preview",
"submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2312527008_Multiome_ATAC_S10_L001_R3_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7756MDMN/",
"accession": "IGVFFI7756MDMN",
"aliases": [
"leif-ludwig:measurement2312527008_scATAC_R3_007"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-12T22:10:47.995784+00:00",
"file_format": "fastq",
"file_size": 2652157845,
"href": "/sequence-files/IGVFFI7756MDMN/@@download/IGVFFI7756MDMN.fastq.gz",
"md5sum": "7322d25c9786efc95c19f66ab14ddc6b",
"s3_uri": "s3://igvf-restricted-files/2025/03/12/7351a085-ba7a-4e8a-b4b4-636c02866a6b/IGVFFI7756MDMN.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022841/",
"status": "released",
"term_name": "Illumina NovaSeq X Plus"
},
"status": "preview",
"submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2312527008_Multiome_ATAC_S10_L007_R3_001.fastq.gz",
"upload_status": "validated"
}
],
"input_for": [],
"lab": {
"@id": "/labs/leif-ludwig/",
"title": "Leif Ludwig, MDC"
},
"multiome_size": 2,
"notes": "This measurement set previously used scMito-seq as a preferred_assay_title, but this enum is now replaced with 10x multiome with scMito-seq.",
"onlist_files": [
"/tabular-files/IGVFFI7587TJLC/"
],
"onlist_method": "no combination",
"preferred_assay_title": "10x multiome with scMito-seq",
"protocols": [
"https://www.protocols.io/view/mtscmultiome-atac-gex-protocol-d554888w"
],
"related_multiome_datasets": [
{
"@id": "/measurement-sets/IGVFDS9079ESIO/",
"accession": "IGVFDS9079ESIO",
"status": "preview"
}
],
"samples": [
{
"@id": "/primary-cells/IGVFSM7994IWYP/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7994IWYP",
"aliases": [
"leif-ludwig:sample2312527008"
],
"classifications": [
"primary cell"
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/426307fa-9064-4824-a88a-2e033218fc6c/",
"certificate_identifier": "IP115-11",
"controlled_access": true,
"data_use_limitation": "GRU",
"data_use_limitation_modifiers": [
"PUB"
],
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "peripheral blood mononuclear cell",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 69 years) peripheral blood mononuclear cell",
"taxa": "Homo sapiens"
}
],
"schema_version": "26",
"status": "preview",
"submitted_by": {
"@id": "/users/8164e524-79d5-4407-8a75-c0ea353d28ea/",
"title": "Ludwig Lab"
},
"submitted_files_timestamp": "2025-03-12T21:55:17.122973+00:00",
"summary": "10x multiome with scMito-seq",
"uuid": "73d80d1d-f18f-4612-8407-945c158a614a"
}