{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS6145VWNH/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS6145VWNH",
"aliases": [
"igvf:corces_measurementSet_RP028_G7_RNA"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003109/",
"assay_slims": [
"gene expression"
],
"status": "released",
"term_name": "single-nucleus RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6489DOPG](/human-donors/IGVFDO6489DOPG/) has in progress subobject phenotypic feature [ed38e086-4d93-4d45-b2c4-e92658dbdb57](/phenotypic-features/ed38e086-4d93-4d45-b2c4-e92658dbdb57/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6489DOPG/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6489DOPG](/human-donors/IGVFDO6489DOPG/) has in progress subobject phenotypic feature [d1b8d684-9089-4797-b468-e66e6208a6a4](/phenotypic-features/d1b8d684-9089-4797-b468-e66e6208a6a4/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6489DOPG/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6489DOPG](/human-donors/IGVFDO6489DOPG/) has in progress subobject phenotypic feature [d0131e87-f69e-47de-a1f5-7dbda60dabef](/phenotypic-features/d0131e87-f69e-47de-a1f5-7dbda60dabef/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6489DOPG/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6489DOPG](/human-donors/IGVFDO6489DOPG/) has in progress subobject phenotypic feature [5c44a3b3-503c-4045-becf-3e8a1f74fb42](/phenotypic-features/5c44a3b3-503c-4045-becf-3e8a1f74fb42/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6489DOPG/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6489DOPG](/human-donors/IGVFDO6489DOPG/) has in progress subobject phenotypic feature [d0cc65d7-25b6-4677-bb6b-fa3ad7d9776c](/phenotypic-features/d0cc65d7-25b6-4677-bb6b-fa3ad7d9776c/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6489DOPG/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6489DOPG](/human-donors/IGVFDO6489DOPG/) has in progress subobject phenotypic feature [5113685b-3e4a-4985-b418-d5b8a80c88fc](/phenotypic-features/5113685b-3e4a-4985-b418-d5b8a80c88fc/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6489DOPG/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO0411QFOF](/human-donors/IGVFDO0411QFOF/) has in progress subobject phenotypic feature [99530794-7cba-40b4-a9d0-816f682a6751](/phenotypic-features/99530794-7cba-40b4-a9d0-816f682a6751/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0411QFOF/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO0411QFOF](/human-donors/IGVFDO0411QFOF/) has in progress subobject phenotypic feature [fff30f45-9273-47a0-847f-0619e27db9f1](/phenotypic-features/fff30f45-9273-47a0-847f-0619e27db9f1/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0411QFOF/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO0411QFOF](/human-donors/IGVFDO0411QFOF/) has in progress subobject phenotypic feature [b9914545-281c-4c85-add2-46440dec3556](/phenotypic-features/b9914545-281c-4c85-add2-46440dec3556/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0411QFOF/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO0411QFOF](/human-donors/IGVFDO0411QFOF/) has in progress subobject phenotypic feature [457ba560-b6d1-4bea-b7fa-c043ca79ab7b](/phenotypic-features/457ba560-b6d1-4bea-b7fa-c043ca79ab7b/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0411QFOF/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO0411QFOF](/human-donors/IGVFDO0411QFOF/) has in progress subobject phenotypic feature [f002bd57-9c69-46f5-baeb-02ef36f0ae95](/phenotypic-features/f002bd57-9c69-46f5-baeb-02ef36f0ae95/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0411QFOF/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO0411QFOF](/human-donors/IGVFDO0411QFOF/) has in progress subobject phenotypic feature [e469ed8e-b7b3-43ab-911f-20f855038419](/phenotypic-features/e469ed8e-b7b3-43ab-911f-20f855038419/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0411QFOF/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9028PIDF](/human-donors/IGVFDO9028PIDF/) has in progress subobject phenotypic feature [d5720da2-f518-4f62-ab22-531e43e00201](/phenotypic-features/d5720da2-f518-4f62-ab22-531e43e00201/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9028PIDF/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9028PIDF](/human-donors/IGVFDO9028PIDF/) has in progress subobject phenotypic feature [101b5ed8-c92e-433b-a591-b7bef11037b5](/phenotypic-features/101b5ed8-c92e-433b-a591-b7bef11037b5/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9028PIDF/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9028PIDF](/human-donors/IGVFDO9028PIDF/) has in progress subobject phenotypic feature [ab7e4cfe-ea26-4525-ab85-dd11e60815e3](/phenotypic-features/ab7e4cfe-ea26-4525-ab85-dd11e60815e3/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9028PIDF/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9028PIDF](/human-donors/IGVFDO9028PIDF/) has in progress subobject phenotypic feature [416ac19b-be8b-4230-b781-ac2ad4d72ca0](/phenotypic-features/416ac19b-be8b-4230-b781-ac2ad4d72ca0/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9028PIDF/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8670MHXE](/human-donors/IGVFDO8670MHXE/) has in progress subobject phenotypic feature [1cc41731-96a5-4b5b-8310-74a2a3d6a4c8](/phenotypic-features/1cc41731-96a5-4b5b-8310-74a2a3d6a4c8/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8670MHXE/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8670MHXE](/human-donors/IGVFDO8670MHXE/) has in progress subobject phenotypic feature [a0abf74d-a52a-440e-93a8-2efe26c75d7e](/phenotypic-features/a0abf74d-a52a-440e-93a8-2efe26c75d7e/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8670MHXE/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8670MHXE](/human-donors/IGVFDO8670MHXE/) has in progress subobject phenotypic feature [a06929df-06de-4952-af29-dd3beadf792f](/phenotypic-features/a06929df-06de-4952-af29-dd3beadf792f/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8670MHXE/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8670MHXE](/human-donors/IGVFDO8670MHXE/) has in progress subobject phenotypic feature [f32d9b8c-4e38-489a-8a87-0b307a6a8fc2](/phenotypic-features/f32d9b8c-4e38-489a-8a87-0b307a6a8fc2/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8670MHXE/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8670MHXE](/human-donors/IGVFDO8670MHXE/) has in progress subobject phenotypic feature [cb91524a-966f-4fc4-b3b8-5b1f5e9f7cd5](/phenotypic-features/cb91524a-966f-4fc4-b3b8-5b1f5e9f7cd5/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8670MHXE/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO3501RYHX](/human-donors/IGVFDO3501RYHX/) has in progress subobject phenotypic feature [8dbc3bc3-9a27-4c5c-8796-75440e1d5e6d](/phenotypic-features/8dbc3bc3-9a27-4c5c-8796-75440e1d5e6d/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO3501RYHX/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO3501RYHX](/human-donors/IGVFDO3501RYHX/) has in progress subobject phenotypic feature [e82bb1f8-5de0-4d91-84d6-0d77ad1f2bc1](/phenotypic-features/e82bb1f8-5de0-4d91-84d6-0d77ad1f2bc1/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO3501RYHX/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO3501RYHX](/human-donors/IGVFDO3501RYHX/) has in progress subobject phenotypic feature [ff6e836f-a0c6-4006-981a-358d2d3a7c03](/phenotypic-features/ff6e836f-a0c6-4006-981a-358d2d3a7c03/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO3501RYHX/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO3501RYHX](/human-donors/IGVFDO3501RYHX/) has in progress subobject phenotypic feature [9306bbc1-b3a4-41f0-8fe3-03e191b98d99](/phenotypic-features/9306bbc1-b3a4-41f0-8fe3-03e191b98d99/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO3501RYHX/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO3501RYHX](/human-donors/IGVFDO3501RYHX/) has in progress subobject phenotypic feature [5a2e0d6a-6c20-4740-9cc9-f6eb1f00bee8](/phenotypic-features/5a2e0d6a-6c20-4740-9cc9-f6eb1f00bee8/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO3501RYHX/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO3501RYHX](/human-donors/IGVFDO3501RYHX/) has in progress subobject phenotypic feature [5dc91db6-1de5-4f9b-86fa-9470048ff8fb](/phenotypic-features/5dc91db6-1de5-4f9b-86fa-9470048ff8fb/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO3501RYHX/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8800RKVB](/human-donors/IGVFDO8800RKVB/) has in progress subobject phenotypic feature [1e6fcee5-5039-4c6f-86fc-6271a4ccbc72](/phenotypic-features/1e6fcee5-5039-4c6f-86fc-6271a4ccbc72/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8800RKVB/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8800RKVB](/human-donors/IGVFDO8800RKVB/) has in progress subobject phenotypic feature [4bba57b2-fe4e-46c7-ace5-64469134b74a](/phenotypic-features/4bba57b2-fe4e-46c7-ace5-64469134b74a/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8800RKVB/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8800RKVB](/human-donors/IGVFDO8800RKVB/) has in progress subobject phenotypic feature [d42b2763-dab2-4434-a2ff-90f908a90db1](/phenotypic-features/d42b2763-dab2-4434-a2ff-90f908a90db1/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8800RKVB/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8800RKVB](/human-donors/IGVFDO8800RKVB/) has in progress subobject phenotypic feature [4f2de9a0-55d4-4474-973d-63b58cb1b930](/phenotypic-features/4f2de9a0-55d4-4474-973d-63b58cb1b930/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8800RKVB/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8800RKVB](/human-donors/IGVFDO8800RKVB/) has in progress subobject phenotypic feature [0ba97096-19d9-4d59-873a-9ca2c42354f0](/phenotypic-features/0ba97096-19d9-4d59-873a-9ca2c42354f0/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8800RKVB/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6513APBX](/human-donors/IGVFDO6513APBX/) has in progress subobject phenotypic feature [68fe3a71-6fc0-47e8-834c-794714585a7e](/phenotypic-features/68fe3a71-6fc0-47e8-834c-794714585a7e/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6513APBX/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6513APBX](/human-donors/IGVFDO6513APBX/) has in progress subobject phenotypic feature [b2b44f93-e621-43f7-80a5-3d1b73a794b2](/phenotypic-features/b2b44f93-e621-43f7-80a5-3d1b73a794b2/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6513APBX/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6513APBX](/human-donors/IGVFDO6513APBX/) has in progress subobject phenotypic feature [08a4bc6e-1d5d-46df-92f0-6085a35a75a7](/phenotypic-features/08a4bc6e-1d5d-46df-92f0-6085a35a75a7/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6513APBX/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6513APBX](/human-donors/IGVFDO6513APBX/) has in progress subobject phenotypic feature [8442786a-d708-482c-8764-201d14e47680](/phenotypic-features/8442786a-d708-482c-8764-201d14e47680/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6513APBX/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6513APBX](/human-donors/IGVFDO6513APBX/) has in progress subobject phenotypic feature [e60abb08-e197-449b-8eb8-7172db9d3bac](/phenotypic-features/e60abb08-e197-449b-8eb8-7172db9d3bac/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6513APBX/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO1302YEPX](/human-donors/IGVFDO1302YEPX/) has in progress subobject phenotypic feature [957cdcbe-cef4-45fe-94f2-d2bb63ed5e05](/phenotypic-features/957cdcbe-cef4-45fe-94f2-d2bb63ed5e05/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO1302YEPX/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO1302YEPX](/human-donors/IGVFDO1302YEPX/) has in progress subobject phenotypic feature [f5b4fdb4-cb5d-403a-9c5c-6208c6a3624e](/phenotypic-features/f5b4fdb4-cb5d-403a-9c5c-6208c6a3624e/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO1302YEPX/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO1302YEPX](/human-donors/IGVFDO1302YEPX/) has in progress subobject phenotypic feature [83351a5f-d758-46ad-b40e-64f2557e39e8](/phenotypic-features/83351a5f-d758-46ad-b40e-64f2557e39e8/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO1302YEPX/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO1302YEPX](/human-donors/IGVFDO1302YEPX/) has in progress subobject phenotypic feature [36d319d6-1788-48ea-a5f8-3153454ccab7](/phenotypic-features/36d319d6-1788-48ea-a5f8-3153454ccab7/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO1302YEPX/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO1302YEPX](/human-donors/IGVFDO1302YEPX/) has in progress subobject phenotypic feature [29eaabd2-1a32-481b-a752-2735f7051661](/phenotypic-features/29eaabd2-1a32-481b-a752-2735f7051661/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO1302YEPX/"
}
],
"NOT_COMPLIANT": [
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS6145VWNH](/measurement-sets/IGVFDS6145VWNH/) has sequence file(s): [IGVFFI0391SAYU](/sequence-files/IGVFFI0391SAYU/), [IGVFFI5655SRJX](/sequence-files/IGVFFI5655SRJX/), [IGVFFI7608AGKP](/sequence-files/IGVFFI7608AGKP/), [IGVFFI7844NXFW](/sequence-files/IGVFFI7844NXFW/), [IGVFFI1583GNHZ](/sequence-files/IGVFFI1583GNHZ/), [IGVFFI6948XYQL](/sequence-files/IGVFFI6948XYQL/), [IGVFFI6305LOXA](/sequence-files/IGVFFI6305LOXA/), [IGVFFI9039JVCH](/sequence-files/IGVFFI9039JVCH/) which do not have any `seqspecs`. Sequence files in a file set associated with single cell data are expected to link to a sequence specification file.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS6145VWNH/"
},
{
"category": "missing strand specificity",
"detail": "Measurement set [IGVFDS6145VWNH](/measurement-sets/IGVFDS6145VWNH/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_strand_specificity",
"path": "/measurement-sets/IGVFDS6145VWNH/"
}
],
"WARNING": [
{
"category": "missing analysis",
"detail": "Measurement set [IGVFDS6145VWNH](/measurement-sets/IGVFDS6145VWNH/) is a raw data set with files, but is not listed in any `input_file_sets` for any analysis sets. Raw data sets with files are expected to be associated with at least one analysis set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_input_for",
"path": "/measurement-sets/IGVFDS6145VWNH/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping",
"contact_pi": {
"@id": "/users/eae4c275-1e07-45e4-ae67-3e437a8680bb/",
"title": "Ansuman Satpathy"
},
"title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
},
"control_for": [],
"controlled_access": false,
"creation_timestamp": "2025-03-19T21:45:39.062108+00:00",
"data_use_limitation_summaries": [
"No limitations"
],
"donors": [
{
"@id": "/human-donors/IGVFDO6489DOPG/",
"accession": "IGVFDO6489DOPG",
"aliases": [
"igvf:corces_donor_BANN2118"
],
"sex": "female",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8670MHXE/",
"accession": "IGVFDO8670MHXE",
"aliases": [
"igvf:corces_donor_BANN0874"
],
"sex": "female",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0411QFOF/",
"accession": "IGVFDO0411QFOF",
"aliases": [
"igvf:corces_donor_BANN1750"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9028PIDF/",
"accession": "IGVFDO9028PIDF",
"aliases": [
"igvf:corces_donor_BANN1637"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3501RYHX/",
"accession": "IGVFDO3501RYHX",
"aliases": [
"igvf:corces_donor_BANN1959"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8800RKVB/",
"accession": "IGVFDO8800RKVB",
"aliases": [
"igvf:corces_donor_BANN1872"
],
"sex": "female",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6513APBX/",
"accession": "IGVFDO6513APBX",
"aliases": [
"igvf:corces_donor_BANN0210"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1302YEPX/",
"accession": "IGVFDO1302YEPX",
"aliases": [
"igvf:corces_donor_BANN0215"
],
"sex": "female",
"status": "preview",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI0391SAYU/",
"accession": "IGVFFI0391SAYU",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP028_G7_P078_L008_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T00:23:39.910421+00:00",
"file_format": "fastq",
"file_size": 1064804248,
"href": "/sequence-files/IGVFFI0391SAYU/@@download/IGVFFI0391SAYU.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/3c6025f1-2ced-4bfb-a5fe-1871ed93cc28/IGVFFI0391SAYU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP028_G7_L007_P078_S63_L008_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5655SRJX/",
"accession": "IGVFFI5655SRJX",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP028_G7_P078_L008_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T00:23:44.038171+00:00",
"file_format": "fastq",
"file_size": 13426190199,
"href": "/sequence-files/IGVFFI5655SRJX/@@download/IGVFFI5655SRJX.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/a4b57e98-8841-4357-9b3b-4d65a924a3b8/IGVFFI5655SRJX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP028_G7_L007_P078_S63_L008_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7608AGKP/",
"accession": "IGVFFI7608AGKP",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP028_G7_P078_L008_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T00:23:48.516341+00:00",
"file_format": "fastq",
"file_size": 10228689195,
"href": "/sequence-files/IGVFFI7608AGKP/@@download/IGVFFI7608AGKP.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/4717aae7-2d62-4151-a325-4d58627fa49d/IGVFFI7608AGKP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP028_G7_L007_P078_S63_L008_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7844NXFW/",
"accession": "IGVFFI7844NXFW",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP028_G7_P078_L007_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T00:23:30.784600+00:00",
"file_format": "fastq",
"file_size": 10390313075,
"href": "/sequence-files/IGVFFI7844NXFW/@@download/IGVFFI7844NXFW.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/18029aa1-0adb-49fa-add0-c628f7b9ca96/IGVFFI7844NXFW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP028_G7_L007_P078_S63_L007_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1583GNHZ/",
"accession": "IGVFFI1583GNHZ",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP028_G7_P078_L008_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T00:23:35.175189+00:00",
"file_format": "fastq",
"file_size": 1147578285,
"href": "/sequence-files/IGVFFI1583GNHZ/@@download/IGVFFI1583GNHZ.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/c23f11cc-ede5-44e2-8a76-0a89fe431d8f/IGVFFI1583GNHZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP028_G7_L007_P078_S63_L008_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6948XYQL/",
"accession": "IGVFFI6948XYQL",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP028_G7_P078_L007_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T00:23:25.795889+00:00",
"file_format": "fastq",
"file_size": 13893886452,
"href": "/sequence-files/IGVFFI6948XYQL/@@download/IGVFFI6948XYQL.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/d96d17ab-6589-4e54-af55-c7089251aa28/IGVFFI6948XYQL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP028_G7_L007_P078_S63_L007_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6305LOXA/",
"accession": "IGVFFI6305LOXA",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP028_G7_P078_L007_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T00:23:17.785804+00:00",
"file_format": "fastq",
"file_size": 1155648054,
"href": "/sequence-files/IGVFFI6305LOXA/@@download/IGVFFI6305LOXA.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/32140608-760b-4352-81ab-ec2c8017dabc/IGVFFI6305LOXA.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP028_G7_L007_P078_S63_L007_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9039JVCH/",
"accession": "IGVFFI9039JVCH",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP028_G7_P078_L007_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T00:23:21.700715+00:00",
"file_format": "fastq",
"file_size": 1079256904,
"href": "/sequence-files/IGVFFI9039JVCH/@@download/IGVFFI9039JVCH.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/87204f3d-6a9e-48a3-88a8-83f703c3e44e/IGVFFI9039JVCH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP028_G7_L007_P078_S63_L007_I2_001.fastq.gz",
"upload_status": "validated"
}
],
"input_for": [],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"multiome_size": 2,
"onlist_files": [
"/tabular-files/IGVFFI8751YQRY/"
],
"onlist_method": "no combination",
"preferred_assay_title": "10x multiome",
"protocols": [
"https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn"
],
"related_multiome_datasets": [
{
"@id": "/measurement-sets/IGVFDS6638LYXU/",
"accession": "IGVFDS6638LYXU",
"status": "preview"
}
],
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM3393RSBM/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM3393RSBM",
"aliases": [
"igvf:corces_multiplexedSample_RP028_G7"
],
"classifications": [
"tissue",
"multiplexed sample"
],
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_0080832/",
"status": "in progress",
"term_name": "mild cognitive impairment"
},
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
},
{
"@id": "/phenotype-terms/MONDO_0004975/",
"status": "released",
"term_name": "Alzheimer disease"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001874/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "preview",
"summary": "putamen",
"term_name": "putamen"
},
{
"@id": "/sample-terms/UBERON_0002038/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "preview",
"summary": "substantia nigra",
"term_name": "substantia nigra"
},
{
"@id": "/sample-terms/UBERON_0002740/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "preview",
"summary": "posterior cingulate gyrus",
"term_name": "posterior cingulate gyrus"
},
{
"@id": "/sample-terms/UBERON_0002771/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "preview",
"summary": "middle temporal gyrus",
"term_name": "middle temporal gyrus"
}
],
"status": "preview",
"summary": "multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; ... and 6 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
"schema_version": "26",
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"submitted_files_timestamp": "2025-03-21T00:23:17.785804+00:00",
"summary": "single-nucleus RNA sequencing assay (10x multiome)",
"uuid": "c3d839c4-783b-4a5d-b0e0-af64a03721d4"
}