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{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO4273OHGB](/human-donors/IGVFDO4273OHGB/) has in progress subobject phenotypic feature [b680dc57-e349-4ea9-8cb8-5c5426aaad31](/phenotypic-features/b680dc57-e349-4ea9-8cb8-5c5426aaad31/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO4273OHGB/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO4273OHGB](/human-donors/IGVFDO4273OHGB/) has in progress subobject phenotypic feature [a8a7eb19-35fc-4266-87cf-32ecd8e25f0b](/phenotypic-features/a8a7eb19-35fc-4266-87cf-32ecd8e25f0b/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO4273OHGB/"
}
],
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{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS6107EDWK](/measurement-sets/IGVFDS6107EDWK/) has sequence file(s): [IGVFFI8449JBCK](/sequence-files/IGVFFI8449JBCK/), [IGVFFI1861ILQI](/sequence-files/IGVFFI1861ILQI/), [IGVFFI1653WDPX](/sequence-files/IGVFFI1653WDPX/), [IGVFFI7344RZUD](/sequence-files/IGVFFI7344RZUD/), [IGVFFI5343EHMF](/sequence-files/IGVFFI5343EHMF/), [IGVFFI3934UCHV](/sequence-files/IGVFFI3934UCHV/), [IGVFFI3260MGTX](/sequence-files/IGVFFI3260MGTX/), [IGVFFI5798TJQH](/sequence-files/IGVFFI5798TJQH/) which do not have any `seqspecs`. Sequence files in a file set associated with single cell data are expected to link to a sequence specification file.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS6107EDWK/"
},
{
"category": "missing strand specificity",
"detail": "Measurement set [IGVFDS6107EDWK](/measurement-sets/IGVFDS6107EDWK/) is missing required `strand_specificity`. Gene expression based assays are expected to specify strand specificity.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_strand_specificity",
"path": "/measurement-sets/IGVFDS6107EDWK/"
}
],
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{
"category": "missing analysis",
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}
]
},
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},
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},
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},
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],
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],
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},
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],
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},
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],
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{
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}
],
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},
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],
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],
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}
],
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],
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],
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],
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{
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},
{
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}
],
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],
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{
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"Item"
],
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"summary": "putamen",
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},
{
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"OntologyTerm",
"Item"
],
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"summary": "cerebellar cortex",
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},
{
"@id": "/sample-terms/UBERON_0002740/",
"@type": [
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"OntologyTerm",
"Item"
],
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"summary": "posterior cingulate gyrus",
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},
{
"@id": "/sample-terms/UBERON_0002771/",
"@type": [
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"OntologyTerm",
"Item"
],
"status": "preview",
"summary": "middle temporal gyrus",
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}
],
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"summary": "multiplexed sample: Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 74 years) cerebellar cortex tissue; ... and 8 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
"schema_version": "26",
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"submitted_by": {
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"title": "Ryan Corces"
},
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"summary": "single-nucleus RNA sequencing assay (10x multiome)",
"uuid": "7d09be5a-c186-47f2-acf5-1178cfd57762"
}