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IGVFDS6102WMDF

released
File Set Type
experimental data
Summary
Parse SPLiT-seq
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
  • multiplexed sample: Mus musculus WSB/EiJ (male, 69 days) heart tissue; Mus musculus NZO/H1LtJ (female, 69 days) left cerebral cortex tissue; ... and 12 more samples
Protocols
Aliases
ali-mortazavi:012_13A_illumina
Attribution
Ali Mortazavi, UCI

Sequencing Results (Illumina)

4 items
Read Names
fastq
reads
R1
1
Read 1
AAC3VTCHV
1
6.0 GB
Ali Mortazavi, UCI
validated
fastq
reads
R1
2
Read 1
AAC3VTCHV
2
6.1 GB
Ali Mortazavi, UCI
validated
fastq
reads
R2
1
Read 2
AAC3VTCHV
1
3.5 GB
Ali Mortazavi, UCI
validated
fastq
reads
R2
2
Read 2
AAC3VTCHV
2
3.7 GB
Ali Mortazavi, UCI
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Mus musculus WSB/EiJ (male, 69 days) heart tissue; Mus musculus NZO/H1LtJ (female, 69 days) left cerebral cortex tissue; ... and 12 more samples

Donors

11 items
Aliases
  • ali-mortazavi:057_WSBJ_10M
male
Mus musculus
  • ali-mortazavi:058_WSBJ_10F
female
Mus musculus
  • ali-mortazavi:046_NZOJ_10F
female
Mus musculus
  • ali-mortazavi:076_PWKJ_10F
female
Mus musculus
  • ali-mortazavi:029_AJ_10M
male
Mus musculus
  • ali-mortazavi:016_B6J_10F
female
Mus musculus
  • ali-mortazavi:031_AJ_10M
male
Mus musculus
  • ali-mortazavi:062_WSBJ_10F
female
Mus musculus
  • ali-mortazavi:122_B6J_10F
female
Mus musculus
  • ali-mortazavi:022_B6J_10F
female
Mus musculus

Assay Details

Sequencing Library Types
mRNA enriched

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
Parse SPLiT-seq: sparse gene count matrix
  • ali-mortazavi:igvf_012_Subpool_1_total+core
Ali Mortazavi, UCI