{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS6090MUID/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS6090MUID",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS6090MUID](/measurement-sets/IGVFDS6090MUID/) has sequence file(s) [IGVFFI5656FYDJ](/sequence-files/IGVFFI5656FYDJ/), [IGVFFI8871GOPW](/sequence-files/IGVFFI8871GOPW/), [IGVFFI4743PYQP](/sequence-files/IGVFFI4743PYQP/), [IGVFFI9412CKAI](/sequence-files/IGVFFI9412CKAI/), [IGVFFI2814MFMG](/sequence-files/IGVFFI2814MFMG/), [IGVFFI9052ZZHZ](/sequence-files/IGVFFI9052ZZHZ/), [IGVFFI1431VABH](/sequence-files/IGVFFI1431VABH/), [IGVFFI6131DACM](/sequence-files/IGVFFI6131DACM/), [IGVFFI2078LSNT](/sequence-files/IGVFFI2078LSNT/), [IGVFFI9111MXIH](/sequence-files/IGVFFI9111MXIH/), [IGVFFI3769JODO](/sequence-files/IGVFFI3769JODO/), [IGVFFI9013QYSC](/sequence-files/IGVFFI9013QYSC/), [IGVFFI0707MBTB](/sequence-files/IGVFFI0707MBTB/), [IGVFFI5976IEOZ](/sequence-files/IGVFFI5976IEOZ/), [IGVFFI6752MCCF](/sequence-files/IGVFFI6752MCCF/), [IGVFFI0476BSMO](/sequence-files/IGVFFI0476BSMO/), [IGVFFI5426ELUN](/sequence-files/IGVFFI5426ELUN/), [IGVFFI0769WWGZ](/sequence-files/IGVFFI0769WWGZ/), [IGVFFI3707TENL](/sequence-files/IGVFFI3707TENL/), [IGVFFI3888LQBR](/sequence-files/IGVFFI3888LQBR/), [IGVFFI9734XPAY](/sequence-files/IGVFFI9734XPAY/), [IGVFFI3064NWJJ](/sequence-files/IGVFFI3064NWJJ/), [IGVFFI4551JRAY](/sequence-files/IGVFFI4551JRAY/), [IGVFFI8737YJQR](/sequence-files/IGVFFI8737YJQR/), [IGVFFI9289VZKY](/sequence-files/IGVFFI9289VZKY/), [IGVFFI2602RLFA](/sequence-files/IGVFFI2602RLFA/), [IGVFFI6983HHJM](/sequence-files/IGVFFI6983HHJM/), [IGVFFI2971BGOG](/sequence-files/IGVFFI2971BGOG/), [IGVFFI3242EEOO](/sequence-files/IGVFFI3242EEOO/), [IGVFFI1183GZIE](/sequence-files/IGVFFI1183GZIE/), [IGVFFI5628DMDR](/sequence-files/IGVFFI5628DMDR/), [IGVFFI0314IGQW](/sequence-files/IGVFFI0314IGQW/), [IGVFFI7104LJQM](/sequence-files/IGVFFI7104LJQM/), [IGVFFI7581BJQH](/sequence-files/IGVFFI7581BJQH/), [IGVFFI4763WLUQ](/sequence-files/IGVFFI4763WLUQ/), [IGVFFI2410UIWI](/sequence-files/IGVFFI2410UIWI/), [IGVFFI6903ABEX](/sequence-files/IGVFFI6903ABEX/), [IGVFFI8153SOGZ](/sequence-files/IGVFFI8153SOGZ/), [IGVFFI4088NJSN](/sequence-files/IGVFFI4088NJSN/), [IGVFFI3291PISX](/sequence-files/IGVFFI3291PISX/), [IGVFFI5456KGNX](/sequence-files/IGVFFI5456KGNX/), [IGVFFI9616BIIC](/sequence-files/IGVFFI9616BIIC/), [IGVFFI1805FUTP](/sequence-files/IGVFFI1805FUTP/), [IGVFFI0046KYLI](/sequence-files/IGVFFI0046KYLI/), [IGVFFI0516IUHT](/sequence-files/IGVFFI0516IUHT/), [IGVFFI7812KADG](/sequence-files/IGVFFI7812KADG/), [IGVFFI9187JPER](/sequence-files/IGVFFI9187JPER/), [IGVFFI5447INVW](/sequence-files/IGVFFI5447INVW/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS6090MUID/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS6090MUID](/measurement-sets/IGVFDS6090MUID/) has sequence file(s): [IGVFFI5656FYDJ](/sequence-files/IGVFFI5656FYDJ/), [IGVFFI8871GOPW](/sequence-files/IGVFFI8871GOPW/), [IGVFFI4743PYQP](/sequence-files/IGVFFI4743PYQP/), [IGVFFI9412CKAI](/sequence-files/IGVFFI9412CKAI/), [IGVFFI2814MFMG](/sequence-files/IGVFFI2814MFMG/), [IGVFFI9052ZZHZ](/sequence-files/IGVFFI9052ZZHZ/), [IGVFFI1431VABH](/sequence-files/IGVFFI1431VABH/), [IGVFFI6131DACM](/sequence-files/IGVFFI6131DACM/), [IGVFFI2078LSNT](/sequence-files/IGVFFI2078LSNT/), [IGVFFI9111MXIH](/sequence-files/IGVFFI9111MXIH/), [IGVFFI3769JODO](/sequence-files/IGVFFI3769JODO/), [IGVFFI9013QYSC](/sequence-files/IGVFFI9013QYSC/), [IGVFFI0707MBTB](/sequence-files/IGVFFI0707MBTB/), [IGVFFI5976IEOZ](/sequence-files/IGVFFI5976IEOZ/), [IGVFFI6752MCCF](/sequence-files/IGVFFI6752MCCF/), [IGVFFI0476BSMO](/sequence-files/IGVFFI0476BSMO/), [IGVFFI5426ELUN](/sequence-files/IGVFFI5426ELUN/), [IGVFFI0769WWGZ](/sequence-files/IGVFFI0769WWGZ/), [IGVFFI3707TENL](/sequence-files/IGVFFI3707TENL/), [IGVFFI3888LQBR](/sequence-files/IGVFFI3888LQBR/), [IGVFFI9734XPAY](/sequence-files/IGVFFI9734XPAY/), [IGVFFI3064NWJJ](/sequence-files/IGVFFI3064NWJJ/), [IGVFFI4551JRAY](/sequence-files/IGVFFI4551JRAY/), [IGVFFI8737YJQR](/sequence-files/IGVFFI8737YJQR/), [IGVFFI9289VZKY](/sequence-files/IGVFFI9289VZKY/), [IGVFFI2602RLFA](/sequence-files/IGVFFI2602RLFA/), [IGVFFI6983HHJM](/sequence-files/IGVFFI6983HHJM/), [IGVFFI2971BGOG](/sequence-files/IGVFFI2971BGOG/), [IGVFFI3242EEOO](/sequence-files/IGVFFI3242EEOO/), [IGVFFI1183GZIE](/sequence-files/IGVFFI1183GZIE/), [IGVFFI5628DMDR](/sequence-files/IGVFFI5628DMDR/), [IGVFFI0314IGQW](/sequence-files/IGVFFI0314IGQW/), [IGVFFI7104LJQM](/sequence-files/IGVFFI7104LJQM/), [IGVFFI7581BJQH](/sequence-files/IGVFFI7581BJQH/), [IGVFFI4763WLUQ](/sequence-files/IGVFFI4763WLUQ/), [IGVFFI2410UIWI](/sequence-files/IGVFFI2410UIWI/), [IGVFFI6903ABEX](/sequence-files/IGVFFI6903ABEX/), [IGVFFI8153SOGZ](/sequence-files/IGVFFI8153SOGZ/), [IGVFFI4088NJSN](/sequence-files/IGVFFI4088NJSN/), [IGVFFI3291PISX](/sequence-files/IGVFFI3291PISX/), [IGVFFI5456KGNX](/sequence-files/IGVFFI5456KGNX/), [IGVFFI9616BIIC](/sequence-files/IGVFFI9616BIIC/), [IGVFFI1805FUTP](/sequence-files/IGVFFI1805FUTP/), [IGVFFI0046KYLI](/sequence-files/IGVFFI0046KYLI/), [IGVFFI0516IUHT](/sequence-files/IGVFFI0516IUHT/), [IGVFFI7812KADG](/sequence-files/IGVFFI7812KADG/), [IGVFFI9187JPER](/sequence-files/IGVFFI9187JPER/), [IGVFFI5447INVW](/sequence-files/IGVFFI5447INVW/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS6090MUID/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS6090MUID](/measurement-sets/IGVFDS6090MUID/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS6090MUID/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
"control_file_sets": [
{
"@id": "/measurement-sets/IGVFDS4103BJLT/",
"accession": "IGVFDS4103BJLT",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-THP1-PE2_Exp4_NegControl_AmpliconSequencing"
],
"status": "preview"
}
],
"control_for": [],
"creation_timestamp": "2024-11-25T23:53:03.523106+00:00",
"donors": [
{
"@id": "/human-donors/IGVFDO7359LVPI/",
"accession": "IGVFDO7359LVPI",
"aliases": [
"igvf:donor_of_THP1"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI5656FYDJ/",
"accession": "IGVFFI5656FYDJ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep8_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T07:04:20.811433+00:00",
"file_format": "fastq",
"file_size": 14544618,
"href": "/sequence-files/IGVFFI5656FYDJ/@@download/IGVFFI5656FYDJ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/74aab119-92c5-42ce-809b-d860f91809d7/IGVFFI5656FYDJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep8_S566_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8871GOPW/",
"accession": "IGVFFI8871GOPW",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep3_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:58:04.390117+00:00",
"file_format": "fastq",
"file_size": 15052758,
"href": "/sequence-files/IGVFFI8871GOPW/@@download/IGVFFI8871GOPW.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/260c03ff-3edf-4b4e-ad85-826fd7e04348/IGVFFI8871GOPW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep3_S561_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4743PYQP/",
"accession": "IGVFFI4743PYQP",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep1_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:55:11.149976+00:00",
"file_format": "fastq",
"file_size": 13807602,
"href": "/sequence-files/IGVFFI4743PYQP/@@download/IGVFFI4743PYQP.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/f8b0ed7c-e359-4d25-a001-fe0d23bcf622/IGVFFI4743PYQP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep1_S559_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9412CKAI/",
"accession": "IGVFFI9412CKAI",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep4_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:59:13.425743+00:00",
"file_format": "fastq",
"file_size": 13823961,
"href": "/sequence-files/IGVFFI9412CKAI/@@download/IGVFFI9412CKAI.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/134d4197-0494-43b6-b671-d26f5305c73b/IGVFFI9412CKAI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep4_S562_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2814MFMG/",
"accession": "IGVFFI2814MFMG",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep6_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T07:01:43.385458+00:00",
"file_format": "fastq",
"file_size": 21063207,
"href": "/sequence-files/IGVFFI2814MFMG/@@download/IGVFFI2814MFMG.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/16403ace-99f2-4ec3-82cf-bc9a001b2edd/IGVFFI2814MFMG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep6_S564_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9052ZZHZ/",
"accession": "IGVFFI9052ZZHZ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep7_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T07:03:00.520070+00:00",
"file_format": "fastq",
"file_size": 14208210,
"href": "/sequence-files/IGVFFI9052ZZHZ/@@download/IGVFFI9052ZZHZ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/d3acc661-368e-4a2b-b06e-a5d47bf779ef/IGVFFI9052ZZHZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep7_S565_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1431VABH/",
"accession": "IGVFFI1431VABH",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep5_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T07:00:24.936746+00:00",
"file_format": "fastq",
"file_size": 14146869,
"href": "/sequence-files/IGVFFI1431VABH/@@download/IGVFFI1431VABH.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/1f1217ab-e613-410d-a618-75ff0e0f4faa/IGVFFI1431VABH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep5_S563_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6131DACM/",
"accession": "IGVFFI6131DACM",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep9_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T07:05:44.647599+00:00",
"file_format": "fastq",
"file_size": 13876966,
"href": "/sequence-files/IGVFFI6131DACM/@@download/IGVFFI6131DACM.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/37288b3a-069d-4efa-b6ac-74678d31e9d4/IGVFFI6131DACM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep9_S567_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2078LSNT/",
"accession": "IGVFFI2078LSNT",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep10_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T07:07:09.328308+00:00",
"file_format": "fastq",
"file_size": 13788467,
"href": "/sequence-files/IGVFFI2078LSNT/@@download/IGVFFI2078LSNT.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/6dc87ff5-b44f-4798-a960-7a15f7b19564/IGVFFI2078LSNT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep10_S568_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9111MXIH/",
"accession": "IGVFFI9111MXIH",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep11_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T07:08:34.048683+00:00",
"file_format": "fastq",
"file_size": 14147654,
"href": "/sequence-files/IGVFFI9111MXIH/@@download/IGVFFI9111MXIH.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/3e0a404f-f882-4a00-b5d1-bfdb8176b6b8/IGVFFI9111MXIH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep11_S569_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3769JODO/",
"accession": "IGVFFI3769JODO",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep2_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:56:37.421915+00:00",
"file_format": "fastq",
"file_size": 14557561,
"href": "/sequence-files/IGVFFI3769JODO/@@download/IGVFFI3769JODO.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/fac66a92-8de3-4e30-8d99-76d5aabee164/IGVFFI3769JODO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep2_S560_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9013QYSC/",
"accession": "IGVFFI9013QYSC",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep12_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T07:09:45.350586+00:00",
"file_format": "fastq",
"file_size": 13769888,
"href": "/sequence-files/IGVFFI9013QYSC/@@download/IGVFFI9013QYSC.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/c3e8324c-569d-4c2d-a426-2bae1bfce05d/IGVFFI9013QYSC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep12_S570_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0707MBTB/",
"accession": "IGVFFI0707MBTB",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep10_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:44:15.795579+00:00",
"file_format": "fastq",
"file_size": 16107453,
"href": "/sequence-files/IGVFFI0707MBTB/@@download/IGVFFI0707MBTB.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/086243ef-be6d-481a-8330-b545a9e50805/IGVFFI0707MBTB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep10_S568_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5976IEOZ/",
"accession": "IGVFFI5976IEOZ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep7_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:37:12.664519+00:00",
"file_format": "fastq",
"file_size": 16582852,
"href": "/sequence-files/IGVFFI5976IEOZ/@@download/IGVFFI5976IEOZ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/b9e1b3d4-885c-4736-8e9f-163cf32425b3/IGVFFI5976IEOZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep7_S565_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6752MCCF/",
"accession": "IGVFFI6752MCCF",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep8_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:39:31.057718+00:00",
"file_format": "fastq",
"file_size": 17093724,
"href": "/sequence-files/IGVFFI6752MCCF/@@download/IGVFFI6752MCCF.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/d238e25f-1a0d-4d57-a0e9-72776844ebd1/IGVFFI6752MCCF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep8_S566_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0476BSMO/",
"accession": "IGVFFI0476BSMO",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep11_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:46:37.136643+00:00",
"file_format": "fastq",
"file_size": 16554502,
"href": "/sequence-files/IGVFFI0476BSMO/@@download/IGVFFI0476BSMO.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/01b6bd53-185e-49ac-a293-910298346b7b/IGVFFI0476BSMO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep11_S569_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5426ELUN/",
"accession": "IGVFFI5426ELUN",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep6_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:34:46.834788+00:00",
"file_format": "fastq",
"file_size": 24717825,
"href": "/sequence-files/IGVFFI5426ELUN/@@download/IGVFFI5426ELUN.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/e9eadb14-8cd5-41d2-bab5-721bf52ad333/IGVFFI5426ELUN.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep6_S564_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0769WWGZ/",
"accession": "IGVFFI0769WWGZ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep1_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:21:57.898550+00:00",
"file_format": "fastq",
"file_size": 16196158,
"href": "/sequence-files/IGVFFI0769WWGZ/@@download/IGVFFI0769WWGZ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/48767d18-574a-4211-bdb8-8bdd821b7935/IGVFFI0769WWGZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep1_S559_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3707TENL/",
"accession": "IGVFFI3707TENL",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep9_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:41:52.574059+00:00",
"file_format": "fastq",
"file_size": 16244292,
"href": "/sequence-files/IGVFFI3707TENL/@@download/IGVFFI3707TENL.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/096e22f8-9539-4d85-87c0-8d2e41a2d6dd/IGVFFI3707TENL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep9_S567_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3888LQBR/",
"accession": "IGVFFI3888LQBR",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep4_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:30:07.342165+00:00",
"file_format": "fastq",
"file_size": 16096935,
"href": "/sequence-files/IGVFFI3888LQBR/@@download/IGVFFI3888LQBR.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/650052ba-164c-4ca4-8e1c-99ff6af64066/IGVFFI3888LQBR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep4_S562_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9734XPAY/",
"accession": "IGVFFI9734XPAY",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep2_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:24:50.117175+00:00",
"file_format": "fastq",
"file_size": 16985986,
"href": "/sequence-files/IGVFFI9734XPAY/@@download/IGVFFI9734XPAY.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/9c55e5c8-6f04-4316-a5b5-aab60bcf5a98/IGVFFI9734XPAY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep2_S560_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3064NWJJ/",
"accession": "IGVFFI3064NWJJ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep3_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:27:49.142207+00:00",
"file_format": "fastq",
"file_size": 17338560,
"href": "/sequence-files/IGVFFI3064NWJJ/@@download/IGVFFI3064NWJJ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/084a8e85-100f-4d36-97b2-41a476beab7e/IGVFFI3064NWJJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep3_S561_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4551JRAY/",
"accession": "IGVFFI4551JRAY",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep12_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:48:54.211220+00:00",
"file_format": "fastq",
"file_size": 16134175,
"href": "/sequence-files/IGVFFI4551JRAY/@@download/IGVFFI4551JRAY.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/746c2e16-25c4-4ca8-9b33-463d023f09e3/IGVFFI4551JRAY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep12_S570_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8737YJQR/",
"accession": "IGVFFI8737YJQR",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep5_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:32:26.606223+00:00",
"file_format": "fastq",
"file_size": 16447568,
"href": "/sequence-files/IGVFFI8737YJQR/@@download/IGVFFI8737YJQR.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/93885f7b-c5b1-4b78-abb4-8b67d11e9126/IGVFFI8737YJQR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep5_S563_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9289VZKY/",
"accession": "IGVFFI9289VZKY",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep7_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T13:29:19.843400+00:00",
"file_format": "fastq",
"file_size": 6350811,
"href": "/sequence-files/IGVFFI9289VZKY/@@download/IGVFFI9289VZKY.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/e09137f4-8a8f-4f12-a76f-1fbca9e756b8/IGVFFI9289VZKY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep7_S565_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2602RLFA/",
"accession": "IGVFFI2602RLFA",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep11_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T13:38:52.153519+00:00",
"file_format": "fastq",
"file_size": 5988435,
"href": "/sequence-files/IGVFFI2602RLFA/@@download/IGVFFI2602RLFA.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/2c81437c-ec43-411a-a449-84d16e629baa/IGVFFI2602RLFA.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep11_S569_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6983HHJM/",
"accession": "IGVFFI6983HHJM",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep2_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T13:17:07.321032+00:00",
"file_format": "fastq",
"file_size": 6720889,
"href": "/sequence-files/IGVFFI6983HHJM/@@download/IGVFFI6983HHJM.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/254fe3cd-3405-4ac1-9087-32d988147872/IGVFFI6983HHJM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep2_S560_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2971BGOG/",
"accession": "IGVFFI2971BGOG",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep5_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T13:24:34.630922+00:00",
"file_format": "fastq",
"file_size": 6901681,
"href": "/sequence-files/IGVFFI2971BGOG/@@download/IGVFFI2971BGOG.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/89cd8819-a1d4-4911-8d12-759db616c67f/IGVFFI2971BGOG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep5_S563_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3242EEOO/",
"accession": "IGVFFI3242EEOO",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep3_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T13:19:55.982453+00:00",
"file_format": "fastq",
"file_size": 6614945,
"href": "/sequence-files/IGVFFI3242EEOO/@@download/IGVFFI3242EEOO.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/1a6c0d88-3322-423c-8d55-9cd6f3840b4d/IGVFFI3242EEOO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep3_S561_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1183GZIE/",
"accession": "IGVFFI1183GZIE",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep9_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T13:34:06.212280+00:00",
"file_format": "fastq",
"file_size": 5825552,
"href": "/sequence-files/IGVFFI1183GZIE/@@download/IGVFFI1183GZIE.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/92d3dc60-20e2-4bd2-85b5-6b3ef03c75de/IGVFFI1183GZIE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep9_S567_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5628DMDR/",
"accession": "IGVFFI5628DMDR",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep8_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T13:31:45.313509+00:00",
"file_format": "fastq",
"file_size": 6717769,
"href": "/sequence-files/IGVFFI5628DMDR/@@download/IGVFFI5628DMDR.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/73bc0403-5dc2-4ea5-91af-2e77129f8d1c/IGVFFI5628DMDR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep8_S566_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0314IGQW/",
"accession": "IGVFFI0314IGQW",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep12_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T13:41:19.549171+00:00",
"file_format": "fastq",
"file_size": 5616569,
"href": "/sequence-files/IGVFFI0314IGQW/@@download/IGVFFI0314IGQW.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/d36e8ee6-150c-47c1-8237-525626dbf072/IGVFFI0314IGQW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep12_S570_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7104LJQM/",
"accession": "IGVFFI7104LJQM",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep6_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T13:26:58.099476+00:00",
"file_format": "fastq",
"file_size": 8890280,
"href": "/sequence-files/IGVFFI7104LJQM/@@download/IGVFFI7104LJQM.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/238333fe-84fa-4e45-9fec-6ba6e5b7758b/IGVFFI7104LJQM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep6_S564_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7581BJQH/",
"accession": "IGVFFI7581BJQH",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep4_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T13:22:18.508107+00:00",
"file_format": "fastq",
"file_size": 6924330,
"href": "/sequence-files/IGVFFI7581BJQH/@@download/IGVFFI7581BJQH.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/707bd201-2bbc-4f7b-be08-93982e6b55e9/IGVFFI7581BJQH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep4_S562_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4763WLUQ/",
"accession": "IGVFFI4763WLUQ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep1_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T13:14:11.833189+00:00",
"file_format": "fastq",
"file_size": 6249478,
"href": "/sequence-files/IGVFFI4763WLUQ/@@download/IGVFFI4763WLUQ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/ebbb1dff-6aca-4352-94fa-c247e4dc9fe6/IGVFFI4763WLUQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep1_S559_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2410UIWI/",
"accession": "IGVFFI2410UIWI",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep10_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T13:36:23.226903+00:00",
"file_format": "fastq",
"file_size": 6213989,
"href": "/sequence-files/IGVFFI2410UIWI/@@download/IGVFFI2410UIWI.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/653cdf3b-d82a-416d-824b-0499f8982711/IGVFFI2410UIWI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep10_S568_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6903ABEX/",
"accession": "IGVFFI6903ABEX",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep7_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T17:27:08.582208+00:00",
"file_format": "fastq",
"file_size": 6709502,
"href": "/sequence-files/IGVFFI6903ABEX/@@download/IGVFFI6903ABEX.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/a7bac06b-68c9-48e3-a012-e8773d9add81/IGVFFI6903ABEX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep7_S565_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8153SOGZ/",
"accession": "IGVFFI8153SOGZ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep1_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T17:11:29.439843+00:00",
"file_format": "fastq",
"file_size": 6511671,
"href": "/sequence-files/IGVFFI8153SOGZ/@@download/IGVFFI8153SOGZ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/8f390a31-e335-46ba-9851-4d5afa44a132/IGVFFI8153SOGZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep1_S559_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4088NJSN/",
"accession": "IGVFFI4088NJSN",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep5_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T17:22:13.422991+00:00",
"file_format": "fastq",
"file_size": 6814441,
"href": "/sequence-files/IGVFFI4088NJSN/@@download/IGVFFI4088NJSN.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/ff62a2fb-d7bc-402d-acb4-c0e40767f384/IGVFFI4088NJSN.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep5_S563_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3291PISX/",
"accession": "IGVFFI3291PISX",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep4_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T17:19:48.210494+00:00",
"file_format": "fastq",
"file_size": 6342367,
"href": "/sequence-files/IGVFFI3291PISX/@@download/IGVFFI3291PISX.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/261505d2-45cb-4f99-8c38-7b07d878741b/IGVFFI3291PISX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep4_S562_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5456KGNX/",
"accession": "IGVFFI5456KGNX",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep3_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T17:17:20.991766+00:00",
"file_format": "fastq",
"file_size": 7117665,
"href": "/sequence-files/IGVFFI5456KGNX/@@download/IGVFFI5456KGNX.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/caf2958a-3a60-4d21-a56f-f884c78f43ac/IGVFFI5456KGNX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep3_S561_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9616BIIC/",
"accession": "IGVFFI9616BIIC",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep10_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T17:34:28.639715+00:00",
"file_format": "fastq",
"file_size": 6512266,
"href": "/sequence-files/IGVFFI9616BIIC/@@download/IGVFFI9616BIIC.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/ee6efe17-dbb1-4504-a311-6a6cd032177f/IGVFFI9616BIIC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep10_S568_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1805FUTP/",
"accession": "IGVFFI1805FUTP",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep9_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T17:32:04.071310+00:00",
"file_format": "fastq",
"file_size": 6689150,
"href": "/sequence-files/IGVFFI1805FUTP/@@download/IGVFFI1805FUTP.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/094c3897-fac0-4189-8bde-6189fd84a4e8/IGVFFI1805FUTP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep9_S567_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0046KYLI/",
"accession": "IGVFFI0046KYLI",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep2_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T17:14:21.061386+00:00",
"file_format": "fastq",
"file_size": 7071100,
"href": "/sequence-files/IGVFFI0046KYLI/@@download/IGVFFI0046KYLI.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/324acfdb-f31d-432e-b211-d5063f754e30/IGVFFI0046KYLI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep2_S560_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0516IUHT/",
"accession": "IGVFFI0516IUHT",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep6_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T17:24:37.899906+00:00",
"file_format": "fastq",
"file_size": 9811541,
"href": "/sequence-files/IGVFFI0516IUHT/@@download/IGVFFI0516IUHT.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/c275ab14-5738-4431-a678-fe64362fcc27/IGVFFI0516IUHT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep6_S564_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7812KADG/",
"accession": "IGVFFI7812KADG",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep11_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T17:36:55.130350+00:00",
"file_format": "fastq",
"file_size": 6729221,
"href": "/sequence-files/IGVFFI7812KADG/@@download/IGVFFI7812KADG.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/c1244f4a-ac61-4562-b74d-5c7a88528d2b/IGVFFI7812KADG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep11_S569_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9187JPER/",
"accession": "IGVFFI9187JPER",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep12_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T17:39:20.876149+00:00",
"file_format": "fastq",
"file_size": 6489846,
"href": "/sequence-files/IGVFFI9187JPER/@@download/IGVFFI9187JPER.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/32679f8a-1153-4cca-8da7-c62ebb1cbcb5/IGVFFI9187JPER.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep12_S570_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5447INVW/",
"accession": "IGVFFI5447INVW",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep8_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T17:29:37.816623+00:00",
"file_format": "fastq",
"file_size": 6973949,
"href": "/sequence-files/IGVFFI5447INVW/@@download/IGVFFI5447INVW.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/6c1b2931-c3e0-42c1-a3b7-97449c755700/IGVFFI5447INVW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep4-BinA-PCRrep8_S566_I2_001.fastq.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS4833ZRTZ/"
],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"notes": "This measurement set previously used Variant FlowFISH as a preferred_assay_title, but this enum is now removed. So it has been defaulted to Variant-EFFECTS.",
"preferred_assay_title": "Variant-EFFECTS",
"protocols": [
"https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1"
],
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM9224JLWC/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9224JLWC",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep4-BinA"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
{
"@id": "/construct-library-sets/IGVFDS4955GEYO/",
"accession": "IGVFDS4955GEYO",
"file_set_type": "guide library",
"status": "preview",
"summary": "guide (sgRNA) library targeting sequence variants in a genomic locus"
}
],
"modifications": [
{
"@id": "/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/",
"modality": "prime editing",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "preview",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 0-25% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "preview",
"submitted_by": {
"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_files_timestamp": "2024-11-26T06:55:11.149976+00:00",
"summary": "CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus",
"targeted_genes": [
{
"@id": "/genes/ENSG00000108179/",
"geneid": "ENSG00000108179",
"name": "peptidylprolyl isomerase F",
"status": "released",
"symbol": "PPIF",
"synonyms": [
"rotamase F",
"CYP3",
"cyclophilin F",
"mitochondrial cyclophilin",
"peptidyl-prolyl cis-trans isomerase, mitochondrial",
"CypD",
"Cyp-D",
"cyclophilin 3",
"cyclophilin D",
"CyP-M",
"peptidyl-prolyl cis-trans isomerase F, mitochondrial",
"PPIase F"
]
}
],
"uuid": "b5392576-31b4-478b-9cad-317b2dd31c13"
}