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INDEXED
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MeasurementSet
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IGVFDS6089BPPE
IGVFDS6089BPPE
released
GRU
Json view
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 181)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
buenrostro-bernstein:scATAC Lib 454
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
21 items
1
2
3
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0930LYPL
fastq
reads
I1
942
Barcode index
IGVFFI3084YMDU
Illumina NovaSeq X
22773CLT3
799 MB
Jason Buenrostro, Broad
validated
IGVFFI1332ELXA
fastq
reads
R2
1068
Read 2
IGVFFI0482OTDT
Illumina NovaSeq X
22773CLT3
905 MB
Jason Buenrostro, Broad
validated
IGVFFI1541WZZV
fastq
reads
R1
942
Read 1
IGVFFI3084YMDU
Illumina NovaSeq X
22773CLT3
1.9 GB
Jason Buenrostro, Broad
validated
IGVFFI1582PVGW
fastq
reads
I1
1068
Barcode index
IGVFFI0482OTDT
Illumina NovaSeq X
22773CLT3
794 MB
Jason Buenrostro, Broad
validated
IGVFFI2001UCPT
fastq
reads
R1
984
Read 1
IGVFFI2322VNFL
Illumina NovaSeq X
22773CLT3
1.9 GB
Jason Buenrostro, Broad
validated
IGVFFI3016GFNM
fastq
reads
R1
4101
Read 1
IGVFFI6562MCNQ
Illumina NovaSeq X
22523KLT3
1.4 GB
Jason Buenrostro, Broad
validated
IGVFFI3113NVCM
fastq
reads
R1
1068
Read 1
IGVFFI0482OTDT
Illumina NovaSeq X
22773CLT3
1.9 GB
Jason Buenrostro, Broad
validated
IGVFFI3143XCJH
fastq
reads
R1
4065
Read 1
IGVFFI3381YRUX
Illumina NovaSeq X
22523KLT3
1.4 GB
Jason Buenrostro, Broad
validated
IGVFFI3166EWXT
fastq
reads
I1
984
Barcode index
IGVFFI2322VNFL
Illumina NovaSeq X
22773CLT3
805 MB
Jason Buenrostro, Broad
validated
IGVFFI3407SORQ
fastq
reads
R2
4065
Read 2
IGVFFI3381YRUX
Illumina NovaSeq X
22523KLT3
690 MB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM6809WZDC
InVitroSystem
induced pluripotent stem cell
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 181)
Donors
100 items
1
2
3
4
5
10
Accession
Aliases
Sex
Taxa
IGVFDO0143YSWQ
buenrostro-bernstein:Donor 1860
unspecified
Homo sapiens
IGVFDO0144AKUR
buenrostro-bernstein:Donor 1850
unspecified
Homo sapiens
IGVFDO0166JLWT
buenrostro-bernstein:Donor 1816
unspecified
Homo sapiens
IGVFDO0186ZZOL
buenrostro-bernstein:Donor 1862
unspecified
Homo sapiens
IGVFDO0233FJJF
buenrostro-bernstein:Donor 1834
unspecified
Homo sapiens
IGVFDO0273LMQQ
buenrostro-bernstein:Donor 1876
unspecified
Homo sapiens
IGVFDO0285FFEG
buenrostro-bernstein:Donor 1828
unspecified
Homo sapiens
IGVFDO0392YIJG
buenrostro-bernstein:Donor 1892
unspecified
Homo sapiens
IGVFDO0436YOXD
buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
IGVFDO0452ROLO
buenrostro-bernstein:Donor 1867
unspecified
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS6383WAZV
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 439
Jason Buenrostro, Broad