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IGVFDS6082PVJJ

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (female, 25.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell; ... and 18 more samples
Protocols
Aliases
jimmie-ye:XX4-SC3_snATAC
Attribution
Jimmie Ye, UCSF

Sequencing Results (Illumina)

20 items
Read Names
fastq
reads
R3
424
Read 2
6.4 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
424
1.4 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
425
Barcode index
3.4 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
426
1.4 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
424
Read 1
6.2 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
425
Read 1
6.1 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
427
Barcode index
3.5 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
426
Read 2
6.5 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
428
Read 1
6.2 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
424
Barcode index
3.4 GB
Jimmie Ye, UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 25.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell; ... and 18 more samples

Donors

20 items
Aliases
  • jimmie-ye:donor_27
male
Homo sapiens
  • jimmie-ye:donor_356
female
Homo sapiens
  • jimmie-ye:donor_295
female
Homo sapiens
  • jimmie-ye:donor_301
female
Homo sapiens
  • jimmie-ye:donor_235
male
Homo sapiens
  • jimmie-ye:donor_24
male
Homo sapiens
  • jimmie-ye:donor_26
male
Homo sapiens
  • jimmie-ye:donor_73
male
Homo sapiens
  • jimmie-ye:donor_25
female
Homo sapiens
  • jimmie-ye:donor_51
female
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • jimmie-ye:XX4-SC3_snRNA
Jimmie Ye, UCSF