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IGVFDS6045MTVX

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; ... and 6 more samples
Protocols
Aliases
igvf:corces_measurementSet_RP028_G3_ATAC

Sequencing Results (Illumina)

8 items
Read Names
fastq
reads
R3
1
Read 2
19NHCA4LE
4
9.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
19NHCA4LE
5
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
19NHCA4LE
4
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
19NHCA4LE
4
10 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Barcode index
19NHCA4LE
4
2.5 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R3
1
Read 2
19NHCA4LE
5
9.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
19NHCA4LE
5
10 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Barcode index
19NHCA4LE
5
2.5 GB
Ryan Corces, Gladstone Institute UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; ... and 6 more samples

Donors

8 items
Aliases
  • igvf:corces_donor_BANN1750
male
Homo sapiens
  • igvf:corces_donor_BANN0215
female
Homo sapiens
  • igvf:corces_donor_BANN1959
male
Homo sapiens
  • igvf:corces_donor_BANN2118
female
Homo sapiens
  • igvf:corces_donor_BANN0210
male
Homo sapiens
  • igvf:corces_donor_BANN0874
female
Homo sapiens
  • igvf:corces_donor_BANN1872
female
Homo sapiens
  • igvf:corces_donor_BANN1637
male
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_RP028_G3_RNA
Ryan Corces, Gladstone Institute UCSF

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF