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INDEXED
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MeasurementSet
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IGVFDS6028HMKC
IGVFDS6028HMKC
released
GRU
Json view
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 170)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
buenrostro-bernstein:scATAC Lib 387
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
12 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1341ZNPL
fastq
reads
R2
3867
Read 2
IGVFFI8312WFGJ
Illumina NovaSeq X
22523KLT3
1.1 GB
Jason Buenrostro, Broad
validated
IGVFFI2267OLBZ
fastq
reads
I1
3903
Barcode index
IGVFFI5063GFAB
Illumina NovaSeq X
22523KLT3
954 MB
Jason Buenrostro, Broad
validated
IGVFFI2784MRCB
fastq
reads
I1
4372
Barcode index
IGVFFI3970TTVL
Illumina NovaSeq 6000
H75F7DSX5
2.2 GB
Jason Buenrostro, Broad
validated
IGVFFI2990ZXZC
fastq
reads
I1
4336
Barcode index
IGVFFI3604FPPZ
Illumina NovaSeq 6000
H75F7DSX5
2.4 GB
Jason Buenrostro, Broad
validated
IGVFFI3334APRR
fastq
reads
R1
3903
Read 1
IGVFFI5063GFAB
Illumina NovaSeq X
22523KLT3
2.3 GB
Jason Buenrostro, Broad
validated
IGVFFI4204NVAL
fastq
reads
I1
3867
Barcode index
IGVFFI8312WFGJ
Illumina NovaSeq X
22523KLT3
953 MB
Jason Buenrostro, Broad
validated
IGVFFI4650PZRB
fastq
reads
R1
3867
Read 1
IGVFFI8312WFGJ
Illumina NovaSeq X
22523KLT3
2.3 GB
Jason Buenrostro, Broad
validated
IGVFFI4910WCBD
fastq
reads
R2
3903
Read 2
IGVFFI5063GFAB
Illumina NovaSeq X
22523KLT3
1.1 GB
Jason Buenrostro, Broad
validated
IGVFFI6101DTLP
fastq
reads
R1
4336
Read 1
IGVFFI3604FPPZ
Illumina NovaSeq 6000
H75F7DSX5
6.1 GB
Jason Buenrostro, Broad
validated
IGVFFI6787MACA
fastq
reads
R2
4372
Read 2
IGVFFI3970TTVL
Illumina NovaSeq 6000
H75F7DSX5
2.5 GB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM4283NRHT
InVitroSystem
induced pluripotent stem cell
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 170)
Donors
89 items
1
2
3
4
5
9
Accession
Aliases
Sex
Taxa
IGVFDO0080AJWC
buenrostro-bernstein:Donor 1719
unspecified
Homo sapiens
IGVFDO0188QZTI
buenrostro-bernstein:Donor 1735
unspecified
Homo sapiens
IGVFDO0436YOXD
buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
IGVFDO0508ZIBJ
buenrostro-bernstein:Donor 1681
unspecified
Homo sapiens
IGVFDO0533MSQJ
buenrostro-bernstein:Donor 1665
unspecified
Homo sapiens
IGVFDO0554TWWH
buenrostro-bernstein:Donor 1663
unspecified
Homo sapiens
IGVFDO0673LUEU
buenrostro-bernstein:Donor 1661
unspecified
Homo sapiens
IGVFDO0817QBZD
buenrostro-bernstein:Donor 1675
unspecified
Homo sapiens
IGVFDO0823IGCQ
buenrostro-bernstein:Donor 1694
unspecified
Homo sapiens
IGVFDO0993WNIW
buenrostro-bernstein:Donor 1668
unspecified
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5134IZQX
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 266
Jason Buenrostro, Broad