{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS6025ASSH/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS6025ASSH",
"aliases": [
"jesse-engreitz:Jurkat_Stim-IL2RA_prom-BioRep2-FFRep3-BinA_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview in vitro system [IGVFSM5388SXBN](/in-vitro-systems/IGVFSM5388SXBN/) has in progress subobject treatment [cf87f410-54ee-48ef-b654-8443c4fee032](/treatments/cf87f410-54ee-48ef-b654-8443c4fee032/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM5388SXBN/"
},
{
"category": "mismatched status",
"detail": "Preview in vitro system [IGVFSM5388SXBN](/in-vitro-systems/IGVFSM5388SXBN/) has in progress subobject treatment [4b5f0d13-ec20-4b91-85f5-a009cd91451f](/treatments/4b5f0d13-ec20-4b91-85f5-a009cd91451f/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM5388SXBN/"
},
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS6025ASSH](/measurement-sets/IGVFDS6025ASSH/) has sequence file(s) [IGVFFI8302QHUK](/sequence-files/IGVFFI8302QHUK/), [IGVFFI2111MWHW](/sequence-files/IGVFFI2111MWHW/), [IGVFFI0400RDJX](/sequence-files/IGVFFI0400RDJX/), [IGVFFI9274SKBX](/sequence-files/IGVFFI9274SKBX/), [IGVFFI7643VNVG](/sequence-files/IGVFFI7643VNVG/), [IGVFFI2577QLBN](/sequence-files/IGVFFI2577QLBN/), [IGVFFI9362NWEE](/sequence-files/IGVFFI9362NWEE/), [IGVFFI7720NRDK](/sequence-files/IGVFFI7720NRDK/), [IGVFFI5154BWWD](/sequence-files/IGVFFI5154BWWD/), [IGVFFI5767AWRB](/sequence-files/IGVFFI5767AWRB/), [IGVFFI9251AAZC](/sequence-files/IGVFFI9251AAZC/), [IGVFFI8443AQMC](/sequence-files/IGVFFI8443AQMC/), [IGVFFI6287ITDM](/sequence-files/IGVFFI6287ITDM/), [IGVFFI4983GPDY](/sequence-files/IGVFFI4983GPDY/), [IGVFFI1704HSIK](/sequence-files/IGVFFI1704HSIK/), [IGVFFI8616XBFX](/sequence-files/IGVFFI8616XBFX/), [IGVFFI2586BMWL](/sequence-files/IGVFFI2586BMWL/), [IGVFFI9814BZIJ](/sequence-files/IGVFFI9814BZIJ/), [IGVFFI9975QHIZ](/sequence-files/IGVFFI9975QHIZ/), [IGVFFI9963DJZR](/sequence-files/IGVFFI9963DJZR/), [IGVFFI4237FPLY](/sequence-files/IGVFFI4237FPLY/), [IGVFFI0702AYLF](/sequence-files/IGVFFI0702AYLF/), [IGVFFI7011WAOX](/sequence-files/IGVFFI7011WAOX/), [IGVFFI3321NLNQ](/sequence-files/IGVFFI3321NLNQ/), [IGVFFI2035WROJ](/sequence-files/IGVFFI2035WROJ/), [IGVFFI8743AIYW](/sequence-files/IGVFFI8743AIYW/), [IGVFFI8203KWMJ](/sequence-files/IGVFFI8203KWMJ/), [IGVFFI3191HRLQ](/sequence-files/IGVFFI3191HRLQ/), [IGVFFI9703NEUV](/sequence-files/IGVFFI9703NEUV/), [IGVFFI0213CUCQ](/sequence-files/IGVFFI0213CUCQ/), [IGVFFI7671YRQU](/sequence-files/IGVFFI7671YRQU/), [IGVFFI0044TUEQ](/sequence-files/IGVFFI0044TUEQ/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS6025ASSH/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS6025ASSH](/measurement-sets/IGVFDS6025ASSH/) has sequence file(s): [IGVFFI8302QHUK](/sequence-files/IGVFFI8302QHUK/), [IGVFFI2111MWHW](/sequence-files/IGVFFI2111MWHW/), [IGVFFI0400RDJX](/sequence-files/IGVFFI0400RDJX/), [IGVFFI9274SKBX](/sequence-files/IGVFFI9274SKBX/), [IGVFFI7643VNVG](/sequence-files/IGVFFI7643VNVG/), [IGVFFI2577QLBN](/sequence-files/IGVFFI2577QLBN/), [IGVFFI9362NWEE](/sequence-files/IGVFFI9362NWEE/), [IGVFFI7720NRDK](/sequence-files/IGVFFI7720NRDK/), [IGVFFI5154BWWD](/sequence-files/IGVFFI5154BWWD/), [IGVFFI5767AWRB](/sequence-files/IGVFFI5767AWRB/), [IGVFFI9251AAZC](/sequence-files/IGVFFI9251AAZC/), [IGVFFI8443AQMC](/sequence-files/IGVFFI8443AQMC/), [IGVFFI6287ITDM](/sequence-files/IGVFFI6287ITDM/), [IGVFFI4983GPDY](/sequence-files/IGVFFI4983GPDY/), [IGVFFI1704HSIK](/sequence-files/IGVFFI1704HSIK/), [IGVFFI8616XBFX](/sequence-files/IGVFFI8616XBFX/), [IGVFFI2586BMWL](/sequence-files/IGVFFI2586BMWL/), [IGVFFI9814BZIJ](/sequence-files/IGVFFI9814BZIJ/), [IGVFFI9975QHIZ](/sequence-files/IGVFFI9975QHIZ/), [IGVFFI9963DJZR](/sequence-files/IGVFFI9963DJZR/), [IGVFFI4237FPLY](/sequence-files/IGVFFI4237FPLY/), [IGVFFI0702AYLF](/sequence-files/IGVFFI0702AYLF/), [IGVFFI7011WAOX](/sequence-files/IGVFFI7011WAOX/), [IGVFFI3321NLNQ](/sequence-files/IGVFFI3321NLNQ/), [IGVFFI2035WROJ](/sequence-files/IGVFFI2035WROJ/), [IGVFFI8743AIYW](/sequence-files/IGVFFI8743AIYW/), [IGVFFI8203KWMJ](/sequence-files/IGVFFI8203KWMJ/), [IGVFFI3191HRLQ](/sequence-files/IGVFFI3191HRLQ/), [IGVFFI9703NEUV](/sequence-files/IGVFFI9703NEUV/), [IGVFFI0213CUCQ](/sequence-files/IGVFFI0213CUCQ/), [IGVFFI7671YRQU](/sequence-files/IGVFFI7671YRQU/), [IGVFFI0044TUEQ](/sequence-files/IGVFFI0044TUEQ/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS6025ASSH/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS6025ASSH](/measurement-sets/IGVFDS6025ASSH/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS6025ASSH/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
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{
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"accession": "IGVFDS6874YIXA",
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],
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}
],
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{
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"aliases": [
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],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
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],
"schema_version": "23",
"status": "preview",
"submitted_by": {
"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_files_timestamp": "2024-11-22T06:50:59.368317+00:00",
"summary": "CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus",
"targeted_genes": [
{
"@id": "/genes/ENSG00000134460/",
"geneid": "ENSG00000134460",
"name": "interleukin 2 receptor subunit alpha",
"status": "released",
"symbol": "IL2RA",
"synonyms": [
"interleukin-2 receptor subunit alpha",
"IL2R",
"TAC antigen",
"IMD41",
"IL-2R subunit alpha",
"CD25",
"IL-2 receptor subunit alpha",
"IDDM10",
"TCGFR",
"p55",
"interleukin 2 receptor, alpha"
]
}
],
"uuid": "4dbb22aa-6cec-4450-b611-5fa0d92d18cf"
}