IGVFDS6017DONZ

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9    "accession": "IGVFDS6017DONZ",
10    "aliases": [
11        "igvf:corces_measurementSet_RP021_G5_RNA"
12    ],
13    "assay_term": {
14        "@id": "/assay-terms/OBI_0003109/",
15        "assay_slims": [
16            "gene expression"
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18        "status": "released",
19        "term_name": "single-nucleus RNA sequencing assay"
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697            {
698                "category": "missing sequence specification",
699                "detail": "Measurement set [IGVFDS6017DONZ](/measurement-sets/IGVFDS6017DONZ/) has sequence file(s): [IGVFFI3970DVPI](/sequence-files/IGVFFI3970DVPI/), [IGVFFI3065CTHX](/sequence-files/IGVFFI3065CTHX/), [IGVFFI9671NDGI](/sequence-files/IGVFFI9671NDGI/), [IGVFFI0375TEWU](/sequence-files/IGVFFI0375TEWU/), [IGVFFI3565YWVC](/sequence-files/IGVFFI3565YWVC/), [IGVFFI9743NJQT](/sequence-files/IGVFFI9743NJQT/), [IGVFFI2822SAVY](/sequence-files/IGVFFI2822SAVY/), [IGVFFI1124DZRE](/sequence-files/IGVFFI1124DZRE/), [IGVFFI0978ZELA](/sequence-files/IGVFFI0978ZELA/), [IGVFFI8549YQVY](/sequence-files/IGVFFI8549YQVY/), [IGVFFI7286RJWW](/sequence-files/IGVFFI7286RJWW/), [IGVFFI1211BOSZ](/sequence-files/IGVFFI1211BOSZ/), [IGVFFI0364XWBF](/sequence-files/IGVFFI0364XWBF/), [IGVFFI6828OGLD](/sequence-files/IGVFFI6828OGLD/), [IGVFFI6105QSIL](/sequence-files/IGVFFI6105QSIL/), [IGVFFI8572ETKP](/sequence-files/IGVFFI8572ETKP/) which do not have any `seqspecs`. Sequence files in a file set associated with single cell data are expected to link to a sequence specification file.",
700                "level": 50,
701                "level_name": "NOT_COMPLIANT",
702                "name": "audit_missing_seqspec",
703                "path": "/measurement-sets/IGVFDS6017DONZ/"
704            },
705            {
706                "category": "missing strand specificity",
707                "detail": "Measurement set [IGVFDS6017DONZ](/measurement-sets/IGVFDS6017DONZ/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
708                "level": 50,
709                "level_name": "NOT_COMPLIANT",
710                "name": "audit_missing_strand_specificity",
711                "path": "/measurement-sets/IGVFDS6017DONZ/"
712            }
713        ],
714        "WARNING": [
715            {
716                "category": "missing analysis",
717                "detail": "Measurement set [IGVFDS6017DONZ](/measurement-sets/IGVFDS6017DONZ/) is a raw data set with files, but is not listed in any `input_file_sets` for any analysis sets. Raw data sets with files are expected to be associated with at least one analysis set.",
718                "level": 40,
719                "level_name": "WARNING",
720                "name": "audit_input_for",
721                "path": "/measurement-sets/IGVFDS6017DONZ/"
722            }
723        ]
724    },
725    "award": {
726        "@id": "/awards/HG012076/",
727        "component": "mapping",
728        "contact_pi": {
729            "@id": "/users/eae4c275-1e07-45e4-ae67-3e437a8680bb/",
730            "title": "Ansuman Satpathy"
731        },
732        "title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
733    },
734    "control_for": [],
735    "controlled_access": false,
736    "creation_timestamp": "2025-03-19T21:44:07.960478+00:00",
737    "data_use_limitation_summaries": [
738        "No limitations"
739    ],
740    "donors": [
741        {
742            "@id": "/human-donors/IGVFDO9247BEUS/",
743            "accession": "IGVFDO9247BEUS",
744            "aliases": [
745                "igvf:corces_donor_BANN2149"
746            ],
747            "sex": "male",
748            "status": "preview",
749            "taxa": "Homo sapiens"
750        },
751        {
752            "@id": "/human-donors/IGVFDO0877AIRF/",
753            "accession": "IGVFDO0877AIRF",
754            "aliases": [
755                "igvf:corces_donor_BANN0417"
756            ],
757            "sex": "male",
758            "status": "preview",
759            "taxa": "Homo sapiens"
760        },
761        {
762            "@id": "/human-donors/IGVFDO3317CNEB/",
763            "accession": "IGVFDO3317CNEB",
764            "aliases": [
765                "igvf:corces_donor_BANN1902"
766            ],
767            "sex": "male",
768            "status": "preview",
769            "taxa": "Homo sapiens"
770        },
771        {
772            "@id": "/human-donors/IGVFDO6489DOPG/",
773            "accession": "IGVFDO6489DOPG",
774            "aliases": [
775                "igvf:corces_donor_BANN2118"
776            ],
777            "sex": "female",
778            "status": "preview",
779            "taxa": "Homo sapiens"
780        },
781        {
782            "@id": "/human-donors/IGVFDO4783EEYU/",
783            "accession": "IGVFDO4783EEYU",
784            "aliases": [
785                "igvf:corces_donor_BANN1865"
786            ],
787            "sex": "male",
788            "status": "preview",
789            "taxa": "Homo sapiens"
790        },
791        {
792            "@id": "/human-donors/IGVFDO6013FYCW/",
793            "accession": "IGVFDO6013FYCW",
794            "aliases": [
795                "igvf:corces_donor_BANN0912"
796            ],
797            "sex": "male",
798            "status": "preview",
799            "taxa": "Homo sapiens"
800        },
801        {
802            "@id": "/human-donors/IGVFDO4438WASY/",
803            "accession": "IGVFDO4438WASY",
804            "aliases": [
805                "igvf:corces_donor_BANN1644"
806            ],
807            "sex": "male",
808            "status": "preview",
809            "taxa": "Homo sapiens"
810        },
811        {
812            "@id": "/human-donors/IGVFDO2045AFUW/",
813            "accession": "IGVFDO2045AFUW",
814            "aliases": [
815                "igvf:corces_donor_BANN1404"
816            ],
817            "sex": "male",
818            "status": "preview",
819            "taxa": "Homo sapiens"
820        },
821        {
822            "@id": "/human-donors/IGVFDO7095OCLJ/",
823            "accession": "IGVFDO7095OCLJ",
824            "aliases": [
825                "igvf:corces_donor_BANN9917"
826            ],
827            "sex": "female",
828            "status": "preview",
829            "taxa": "Homo sapiens"
830        },
831        {
832            "@id": "/human-donors/IGVFDO3795BUZW/",
833            "accession": "IGVFDO3795BUZW",
834            "aliases": [
835                "igvf:corces_donor_BANN1311"
836            ],
837            "sex": "male",
838            "status": "preview",
839            "taxa": "Homo sapiens"
840        },
841        {
842            "@id": "/human-donors/IGVFDO0180JQCL/",
843            "accession": "IGVFDO0180JQCL",
844            "aliases": [
845                "igvf:corces_donor_BANN1344"
846            ],
847            "sex": "female",
848            "status": "preview",
849            "taxa": "Homo sapiens"
850        },
851        {
852            "@id": "/human-donors/IGVFDO6316TGCK/",
853            "accession": "IGVFDO6316TGCK",
854            "aliases": [
855                "igvf:corces_donor_BANN1814"
856            ],
857            "sex": "male",
858            "status": "preview",
859            "taxa": "Homo sapiens"
860        },
861        {
862            "@id": "/human-donors/IGVFDO8046LKFZ/",
863            "accession": "IGVFDO8046LKFZ",
864            "aliases": [
865                "igvf:corces_donor_BANN1242"
866            ],
867            "sex": "male",
868            "status": "preview",
869            "taxa": "Homo sapiens"
870        },
871        {
872            "@id": "/human-donors/IGVFDO2848YHMH/",
873            "accession": "IGVFDO2848YHMH",
874            "aliases": [
875                "igvf:corces_donor_BANN2038"
876            ],
877            "sex": "male",
878            "status": "preview",
879            "taxa": "Homo sapiens"
880        },
881        {
882            "@id": "/human-donors/IGVFDO9236YUAT/",
883            "accession": "IGVFDO9236YUAT",
884            "aliases": [
885                "igvf:corces_donor_BANN0227"
886            ],
887            "sex": "male",
888            "status": "preview",
889            "taxa": "Homo sapiens"
890        },
891        {
892            "@id": "/human-donors/IGVFDO8547HLIG/",
893            "accession": "IGVFDO8547HLIG",
894            "aliases": [
895                "igvf:corces_donor_BANN1812"
896            ],
897            "sex": "female",
898            "status": "preview",
899            "taxa": "Homo sapiens"
900        }
901    ],
902    "externally_hosted": false,
903    "file_set_type": "experimental data",
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908            "aliases": [
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930            "aliases": [
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933            "content_type": "reads",
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951            "accession": "IGVFFI9671NDGI",
952            "aliases": [
953                "igvf:corces_sequenceFile_RNA_RP021_G5_P068_L003_I1"
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955            "content_type": "reads",
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970        },
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992        },
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995            "accession": "IGVFFI3565YWVC",
996            "aliases": [
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1014        },
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1017            "accession": "IGVFFI9743NJQT",
1018            "aliases": [
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1036        },
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1039            "accession": "IGVFFI2822SAVY",
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1053                "term_name": "Illumina NovaSeq X"
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1057            "upload_status": "validated"
1058        },
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1061            "accession": "IGVFFI1124DZRE",
1062            "aliases": [
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1080        },
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1100            "submitted_file_name": "Multiome_RNA_RP021_G5_L005_P068_S3_L004_I1_001.fastq.gz",
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1102        },
1103        {
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1105            "accession": "IGVFFI8549YQVY",
1106            "aliases": [
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1124        },
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1127            "accession": "IGVFFI7286RJWW",
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1129                "igvf:corces_sequenceFile_RNA_RP021_G5_P068_L001_I1"
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1142            },
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1144            "submitted_file_name": "Multiome_RNA_RP021_G5_L005_P068_S3_L001_I1_001.fastq.gz",
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1146        },
1147        {
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1149            "accession": "IGVFFI1211BOSZ",
1150            "aliases": [
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1257    ],
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1259    "lab": {
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1261        "title": "Ryan Corces, Gladstone Institute UCSF"
1262    },
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1264    "onlist_files": [
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1269    "protocols": [
1270        "https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn"
1271    ],
1272    "related_multiome_datasets": [
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1275            "accession": "IGVFDS8030DHLN",
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1282            "@type": [
1283                "MultiplexedSample",
1284                "Sample",
1285                "Item"
1286            ],
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1288            "aliases": [
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1291            "classifications": [
1292                "tissue",
1293                "multiplexed sample"
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1300                },
1301                {
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1304                    "term_name": "Parkinson's disease"
1305                },
1306                {
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1309                    "term_name": "cerebral amyloid angiopathy"
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1324                    "@type": [
1325                        "SampleTerm",
1326                        "OntologyTerm",
1327                        "Item"
1328                    ],
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1332                },
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1335                    "@type": [
1336                        "SampleTerm",
1337                        "OntologyTerm",
1338                        "Item"
1339                    ],
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1343                },
1344                {
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1346                    "@type": [
1347                        "SampleTerm",
1348                        "OntologyTerm",
1349                        "Item"
1350                    ],
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1354                },
1355                {
1356                    "@id": "/sample-terms/UBERON_0002771/",
1357                    "@type": [
1358                        "SampleTerm",
1359                        "OntologyTerm",
1360                        "Item"
1361                    ],
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1366            ],
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1369            "taxa": "Homo sapiens",
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1371        }
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1377        "title": "Ryan Corces"
1378    },
1379    "submitted_files_timestamp": "2025-03-20T22:42:55.690867+00:00",
1380    "summary": "single-nucleus RNA sequencing assay (10x multiome)",
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1382}