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INDEXED
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MeasurementSet
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IGVFDS5995LBLA
IGVFDS5995LBLA
released
Json view
File Set Type
experimental data
Summary
snM3C-seq
Assay Term
single nucleus methylation and chromatin conformation capture sequencing
Sample Summaries
fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 14 days, Homo sapiens
Protocols
https://www.protocols.io/view/snm3c-seq3-kqdg3x6ezg25/v1
Aliases
chongyuan-luo:pgp_snm3c_C37_day14
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0128NMJQ
fastq
reads
R1
1
Illumina NovaSeq X
8
2.9 GB
Chongyuan Luo, UCLA
validated
IGVFFI0689NGGB
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
2
2.9 GB
Chongyuan Luo, UCLA
validated
IGVFFI2334OIIY
fastq
reads
R2
2
Read 2
Illumina NovaSeq X
7
3.0 GB
Chongyuan Luo, UCLA
validated
IGVFFI2793RVFV
fastq
reads
R1
1
Illumina NovaSeq X
4
3.0 GB
Chongyuan Luo, UCLA
validated
IGVFFI3287PLSJ
fastq
reads
R2
2
Read 2
Illumina NovaSeq X
5
3.1 GB
Chongyuan Luo, UCLA
validated
IGVFFI4037RLFK
fastq
reads
R2
2
Illumina NovaSeq X
4
3.1 GB
Chongyuan Luo, UCLA
validated
IGVFFI4756YEDJ
fastq
reads
R2
2
Illumina NovaSeq X
8
3.0 GB
Chongyuan Luo, UCLA
validated
IGVFFI5775TJJA
fastq
reads
R1
1
Illumina NovaSeq X
7
2.9 GB
Chongyuan Luo, UCLA
validated
IGVFFI6332QILB
fastq
reads
R2
2
Illumina NovaSeq X
3
3.0 GB
Chongyuan Luo, UCLA
validated
IGVFFI6958KNOZ
fastq
reads
R1
1
Illumina NovaSeq X
3
2.9 GB
Chongyuan Luo, UCLA
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM9219HKPT
InVitroSystem
fibroblast
fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 14 days, Homo sapiens
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO0351NYZH
chongyuan-luo:C37
unspecified
Homo sapiens
Attribution
Award
HG012079
Principal Investigator(s)
Kathrin Plath
,
Noah Zaitlen
,
Chongyuan Luo
,
Jason Ernst
,
Roy Wollman
Contact P.I.
Chongyuan Luo
Lab
Chongyuan Luo, UCLA