{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS5934LTVM/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS5934LTVM",
"aliases": [
"ali-mortazavi:009_67D_illumina"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003109/",
"assay_slims": [
"gene expression"
],
"status": "released",
"term_name": "single-nucleus RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released multiplexed sample [IGVFSM1354VRSV](/multiplexed-samples/IGVFSM1354VRSV/) has in progress subobject tabular file [IGVFFI9994MHCA](/tabular-files/IGVFFI9994MHCA/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM1354VRSV/"
},
{
"category": "missing publication",
"detail": "Multiplexed sample [IGVFSM1354VRSV](/multiplexed-samples/IGVFSM1354VRSV/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/multiplexed-samples/IGVFSM1354VRSV/"
},
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS5934LTVM](/measurement-sets/IGVFDS5934LTVM/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS5934LTVM/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS5934LTVM](/measurement-sets/IGVFDS5934LTVM/) has in progress subobject tabular file [IGVFFI2591OFQO](/tabular-files/IGVFFI2591OFQO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS5934LTVM/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS5934LTVM](/measurement-sets/IGVFDS5934LTVM/) has in progress subobject tabular file [IGVFFI1138MCVX](/tabular-files/IGVFFI1138MCVX/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS5934LTVM/"
}
]
},
"award": {
"@id": "/awards/HG012077/",
"component": "mapping",
"contact_pi": {
"@id": "/users/2c33e192-e815-4384-a220-72a0992cbe24/",
"title": "Ali Mortazavi"
},
"title": "Center for Mouse Genomic Variation at Single Cell Resolution"
},
"control_for": [],
"creation_timestamp": "2023-10-12T16:21:12.794003+00:00",
"data_use_limitation_summaries": [
"no certificate"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO6607QZPA/",
"accession": "IGVFDO6607QZPA",
"aliases": [
"ali-mortazavi:050_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7610XXRR/",
"accession": "IGVFDO7610XXRR",
"aliases": [
"ali-mortazavi:072_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1744FDIX/",
"accession": "IGVFDO1744FDIX",
"aliases": [
"ali-mortazavi:036_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0813DZTW/",
"accession": "IGVFDO0813DZTW",
"aliases": [
"ali-mortazavi:069_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3762EAWT/",
"accession": "IGVFDO3762EAWT",
"aliases": [
"ali-mortazavi:076_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4788BIQB/",
"accession": "IGVFDO4788BIQB",
"aliases": [
"ali-mortazavi:020_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7957DMLJ/",
"accession": "IGVFDO7957DMLJ",
"aliases": [
"ali-mortazavi:033_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5085MJSP/",
"accession": "IGVFDO5085MJSP",
"aliases": [
"ali-mortazavi:048_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4725SNCJ/",
"accession": "IGVFDO4725SNCJ",
"aliases": [
"ali-mortazavi:017_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0026YRCR/",
"accession": "IGVFDO0026YRCR",
"aliases": [
"ali-mortazavi:018_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6219LVKW/",
"accession": "IGVFDO6219LVKW",
"aliases": [
"ali-mortazavi:032_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9560CEGZ/",
"accession": "IGVFDO9560CEGZ",
"aliases": [
"ali-mortazavi:061_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0696DMIA/",
"accession": "IGVFDO0696DMIA",
"aliases": [
"ali-mortazavi:057_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7951JDSP/",
"accession": "IGVFDO7951JDSP",
"aliases": [
"ali-mortazavi:026_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2292YGGE/",
"accession": "IGVFDO2292YGGE",
"aliases": [
"ali-mortazavi:049_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3603MEIO/",
"accession": "IGVFDO3603MEIO",
"aliases": [
"ali-mortazavi:084_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5737FRWD/",
"accession": "IGVFDO5737FRWD",
"aliases": [
"ali-mortazavi:081_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9199TPBC/",
"accession": "IGVFDO9199TPBC",
"aliases": [
"ali-mortazavi:071_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2753JGYS/",
"accession": "IGVFDO2753JGYS",
"aliases": [
"ali-mortazavi:095_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0430HQIU/",
"accession": "IGVFDO0430HQIU",
"aliases": [
"ali-mortazavi:041_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1643VEDI/",
"accession": "IGVFDO1643VEDI",
"aliases": [
"ali-mortazavi:019_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2645GUSC/",
"accession": "IGVFDO2645GUSC",
"aliases": [
"ali-mortazavi:060_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6066JIEJ/",
"accession": "IGVFDO6066JIEJ",
"aliases": [
"ali-mortazavi:043_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6614NNPY/",
"accession": "IGVFDO6614NNPY",
"aliases": [
"ali-mortazavi:089_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5872DFML/",
"accession": "IGVFDO5872DFML",
"aliases": [
"ali-mortazavi:094_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0681EHNP/",
"accession": "IGVFDO0681EHNP",
"aliases": [
"ali-mortazavi:052_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8904OIIT/",
"accession": "IGVFDO8904OIIT",
"aliases": [
"ali-mortazavi:044_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1477BPVO/",
"accession": "IGVFDO1477BPVO",
"aliases": [
"ali-mortazavi:088_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5502NJPS/",
"accession": "IGVFDO5502NJPS",
"aliases": [
"ali-mortazavi:038_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6141KSSQ/",
"accession": "IGVFDO6141KSSQ",
"aliases": [
"ali-mortazavi:024_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7007WBAX/",
"accession": "IGVFDO7007WBAX",
"aliases": [
"ali-mortazavi:016_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1452VDIT/",
"accession": "IGVFDO1452VDIT",
"aliases": [
"ali-mortazavi:035_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2831PZHE/",
"accession": "IGVFDO2831PZHE",
"aliases": [
"ali-mortazavi:077_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4469VYEZ/",
"accession": "IGVFDO4469VYEZ",
"aliases": [
"ali-mortazavi:073_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6112GRYR/",
"accession": "IGVFDO6112GRYR",
"aliases": [
"ali-mortazavi:059_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9142EUBJ/",
"accession": "IGVFDO9142EUBJ",
"aliases": [
"ali-mortazavi:096_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9340WGNV/",
"accession": "IGVFDO9340WGNV",
"aliases": [
"ali-mortazavi:037_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9374WXKK/",
"accession": "IGVFDO9374WXKK",
"aliases": [
"ali-mortazavi:028_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0624KKTV/",
"accession": "IGVFDO0624KKTV",
"aliases": [
"ali-mortazavi:030_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2301HIUQ/",
"accession": "IGVFDO2301HIUQ",
"aliases": [
"ali-mortazavi:067_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3436ZMLY/",
"accession": "IGVFDO3436ZMLY",
"aliases": [
"ali-mortazavi:091_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9890MXGN/",
"accession": "IGVFDO9890MXGN",
"aliases": [
"ali-mortazavi:068_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3534MDFF/",
"accession": "IGVFDO3534MDFF",
"aliases": [
"ali-mortazavi:046_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3655FKMR/",
"accession": "IGVFDO3655FKMR",
"aliases": [
"ali-mortazavi:025_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5539RLXJ/",
"accession": "IGVFDO5539RLXJ",
"aliases": [
"ali-mortazavi:029_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0853BCOL/",
"accession": "IGVFDO0853BCOL",
"aliases": [
"ali-mortazavi:058_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2319OUEC/",
"accession": "IGVFDO2319OUEC",
"aliases": [
"ali-mortazavi:045_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7062NBTQ/",
"accession": "IGVFDO7062NBTQ",
"aliases": [
"ali-mortazavi:079_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0751WQHI/",
"accession": "IGVFDO0751WQHI",
"aliases": [
"ali-mortazavi:080_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5258MBVH/",
"accession": "IGVFDO5258MBVH",
"aliases": [
"ali-mortazavi:040_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9510ILZG/",
"accession": "IGVFDO9510ILZG",
"aliases": [
"ali-mortazavi:053_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3662UKFW/",
"accession": "IGVFDO3662UKFW",
"aliases": [
"ali-mortazavi:087_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3207TERA/",
"accession": "IGVFDO3207TERA",
"aliases": [
"ali-mortazavi:086_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8322VYDU/",
"accession": "IGVFDO8322VYDU",
"aliases": [
"ali-mortazavi:093_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2106EEWB/",
"accession": "IGVFDO2106EEWB",
"aliases": [
"ali-mortazavi:078_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4707SGWM/",
"accession": "IGVFDO4707SGWM",
"aliases": [
"ali-mortazavi:051_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5177QEWF/",
"accession": "IGVFDO5177QEWF",
"aliases": [
"ali-mortazavi:063_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5183UZGS/",
"accession": "IGVFDO5183UZGS",
"aliases": [
"ali-mortazavi:021_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7255VZBN/",
"accession": "IGVFDO7255VZBN",
"aliases": [
"ali-mortazavi:062_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8152XDDC/",
"accession": "IGVFDO8152XDDC",
"aliases": [
"ali-mortazavi:090_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3640WUBU/",
"accession": "IGVFDO3640WUBU",
"aliases": [
"ali-mortazavi:066_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7254QNQZ/",
"accession": "IGVFDO7254QNQZ",
"aliases": [
"ali-mortazavi:031_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5523UFUN/",
"accession": "IGVFDO5523UFUN",
"aliases": [
"ali-mortazavi:070_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9202WGJZ/",
"accession": "IGVFDO9202WGJZ",
"aliases": [
"ali-mortazavi:085_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8958JQIY/",
"accession": "IGVFDO8958JQIY",
"aliases": [
"ali-mortazavi:047_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI9338WGZA/",
"accession": "IGVFFI9338WGZA",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T21:48:26.729157+00:00",
"file_format": "fastq",
"file_size": 5175191444,
"href": "/sequence-files/IGVFFI9338WGZA/@@download/IGVFFI9338WGZA.fastq.gz",
"md5sum": "ac810ac82f366084e56d528e82fb18ab",
"s3_uri": "s3://igvf-files/2023/10/12/77771f9b-09c6-433a-a848-8c868f3d3e1e/IGVFFI9338WGZA.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova1/igvf_009_B05_D_nova_N1_L001_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5686MLCK/",
"accession": "IGVFFI5686MLCK",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T22:07:45.719844+00:00",
"file_format": "fastq",
"file_size": 9294273378,
"href": "/sequence-files/IGVFFI5686MLCK/@@download/IGVFFI5686MLCK.fastq.gz",
"md5sum": "b17bdafd38112497954a545dd38a3cf6",
"s3_uri": "s3://igvf-files/2023/10/12/1229dfba-0b7e-4309-a734-c8d44584de14/IGVFFI5686MLCK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova1/igvf_009_B05_D_nova_N1_L004_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1059LPMB/",
"accession": "IGVFFI1059LPMB",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T22:42:43.164970+00:00",
"file_format": "fastq",
"file_size": 5088774772,
"href": "/sequence-files/IGVFFI1059LPMB/@@download/IGVFFI1059LPMB.fastq.gz",
"md5sum": "a0d33e95302b0af22f44e1a7179e0172",
"s3_uri": "s3://igvf-files/2023/10/12/b3188818-4f10-4708-a5c1-c8eae36f1fc0/IGVFFI1059LPMB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova2/igvf_009_B05_D_nova_N2_L004_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7234XOAJ/",
"accession": "IGVFFI7234XOAJ",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T21:51:14.798625+00:00",
"file_format": "fastq",
"file_size": 9687927909,
"href": "/sequence-files/IGVFFI7234XOAJ/@@download/IGVFFI7234XOAJ.fastq.gz",
"md5sum": "a08311e88d95243a213457c4c2be9474",
"s3_uri": "s3://igvf-files/2023/10/12/32019ab2-da1a-412c-a86b-b2745c9584aa/IGVFFI7234XOAJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova1/igvf_009_B05_D_nova_N1_L002_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5230XDFN/",
"accession": "IGVFFI5230XDFN",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T22:15:13.991878+00:00",
"file_format": "fastq",
"file_size": 9148111635,
"href": "/sequence-files/IGVFFI5230XDFN/@@download/IGVFFI5230XDFN.fastq.gz",
"md5sum": "013a5387d0fa1072d5e8d478c84c89d6",
"s3_uri": "s3://igvf-files/2023/10/12/bbfc3aab-91c2-4b05-88c1-55cde9fdf6e7/IGVFFI5230XDFN.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova2/igvf_009_B05_D_nova_N2_L001_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7595JQDU/",
"accession": "IGVFFI7595JQDU",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T22:27:49.762661+00:00",
"file_format": "fastq",
"file_size": 5130926502,
"href": "/sequence-files/IGVFFI7595JQDU/@@download/IGVFFI7595JQDU.fastq.gz",
"md5sum": "db7ec6b40e51e327900f646eedb05065",
"s3_uri": "s3://igvf-files/2023/10/12/4c6b2de3-429d-45f8-9336-2e11b094d38e/IGVFFI7595JQDU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova2/igvf_009_B05_D_nova_N2_L002_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2912NICD/",
"accession": "IGVFFI2912NICD",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T21:56:33.465238+00:00",
"file_format": "fastq",
"file_size": 5220291816,
"href": "/sequence-files/IGVFFI2912NICD/@@download/IGVFFI2912NICD.fastq.gz",
"md5sum": "e16f16b3ab43b0daca21f7ca32484deb",
"s3_uri": "s3://igvf-files/2023/10/12/5d08ba43-577e-4a5b-a5eb-74186f395812/IGVFFI2912NICD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova1/igvf_009_B05_D_nova_N1_L002_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3321MICH/",
"accession": "IGVFFI3321MICH",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T22:05:10.749660+00:00",
"file_format": "fastq",
"file_size": 5243465774,
"href": "/sequence-files/IGVFFI3321MICH/@@download/IGVFFI3321MICH.fastq.gz",
"md5sum": "070a58095ab8aa2ee243f3c3b992f231",
"s3_uri": "s3://igvf-files/2023/10/12/09f1f838-7a4c-4633-960e-da3bc217ff74/IGVFFI3321MICH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova1/igvf_009_B05_D_nova_N1_L003_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2608PGHL/",
"accession": "IGVFFI2608PGHL",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T21:43:34.489232+00:00",
"file_format": "fastq",
"file_size": 9530897746,
"href": "/sequence-files/IGVFFI2608PGHL/@@download/IGVFFI2608PGHL.fastq.gz",
"md5sum": "daefff9c85f67a4bb36dccfb87703779",
"s3_uri": "s3://igvf-files/2023/10/12/b30cb4e9-11d1-4374-a274-7f6b8ee38485/IGVFFI2608PGHL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova1/igvf_009_B05_D_nova_N1_L001_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8254ACCL/",
"accession": "IGVFFI8254ACCL",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T21:59:24.228842+00:00",
"file_format": "fastq",
"file_size": 9718332663,
"href": "/sequence-files/IGVFFI8254ACCL/@@download/IGVFFI8254ACCL.fastq.gz",
"md5sum": "e525d79e97f1ca4f567031c5a70c910f",
"s3_uri": "s3://igvf-files/2023/10/12/6a756dec-1bf4-4cf9-a4b1-b0ea5c282f19/IGVFFI8254ACCL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova1/igvf_009_B05_D_nova_N1_L003_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2948KVHG/",
"accession": "IGVFFI2948KVHG",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T22:23:02.797164+00:00",
"file_format": "fastq",
"file_size": 9417204603,
"href": "/sequence-files/IGVFFI2948KVHG/@@download/IGVFFI2948KVHG.fastq.gz",
"md5sum": "abb6be2ff68e8de02e4e29293e27d532",
"s3_uri": "s3://igvf-files/2023/10/12/68cee73c-1645-4033-9582-11b2a918e197/IGVFFI2948KVHG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova2/igvf_009_B05_D_nova_N2_L002_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7113LNRI/",
"accession": "IGVFFI7113LNRI",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T22:37:56.685309+00:00",
"file_format": "fastq",
"file_size": 9310014601,
"href": "/sequence-files/IGVFFI7113LNRI/@@download/IGVFFI7113LNRI.fastq.gz",
"md5sum": "cad8ce8659a2d798fad261983a4aa942",
"s3_uri": "s3://igvf-files/2023/10/12/cf699d37-8ae6-43cb-8c83-6b6f72c7f57f/IGVFFI7113LNRI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova2/igvf_009_B05_D_nova_N2_L004_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7172CWLG/",
"accession": "IGVFFI7172CWLG",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T22:12:38.403512+00:00",
"file_format": "fastq",
"file_size": 5058652821,
"href": "/sequence-files/IGVFFI7172CWLG/@@download/IGVFFI7172CWLG.fastq.gz",
"md5sum": "8f7fbfcfcd94afd6ab5465f20ea5b042",
"s3_uri": "s3://igvf-files/2023/10/12/e4fd6278-8f51-46b4-b341-d9716bc533fe/IGVFFI7172CWLG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova1/igvf_009_B05_D_nova_N1_L004_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1362KPQO/",
"accession": "IGVFFI1362KPQO",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T22:20:20.933354+00:00",
"file_format": "fastq",
"file_size": 5030864323,
"href": "/sequence-files/IGVFFI1362KPQO/@@download/IGVFFI1362KPQO.fastq.gz",
"md5sum": "260c95d55dfe2fac1041bf66cfea29fb",
"s3_uri": "s3://igvf-files/2023/10/12/f8a9caa7-3ebc-4d9d-a2fa-7760df4c445b/IGVFFI1362KPQO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova2/igvf_009_B05_D_nova_N2_L001_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7861MKBV/",
"accession": "IGVFFI7861MKBV",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T22:30:23.846066+00:00",
"file_format": "fastq",
"file_size": 9325757082,
"href": "/sequence-files/IGVFFI7861MKBV/@@download/IGVFFI7861MKBV.fastq.gz",
"md5sum": "c0addd1d5625a9ed39f823c446382328",
"s3_uri": "s3://igvf-files/2023/10/12/60fde5f6-d72f-4ef6-adad-94734739acaa/IGVFFI7861MKBV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova2/igvf_009_B05_D_nova_N2_L003_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3905DOTP/",
"accession": "IGVFFI3905DOTP",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-12T22:35:05.765464+00:00",
"file_format": "fastq",
"file_size": 5096173114,
"href": "/sequence-files/IGVFFI3905DOTP/@@download/IGVFFI3905DOTP.fastq.gz",
"md5sum": "9dd4dfd5f36ae8e2c6b1c005b0cb3063",
"s3_uri": "s3://igvf-files/2023/10/12/39ca180e-73df-48e9-b105-e7165bdc1bb8/IGVFFI3905DOTP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_009/nova2/igvf_009_B05_D_nova_N2_L003_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI3940UKII/",
"accession": "IGVFFI3940UKII",
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T17:31:17.341814+00:00",
"file_format": "yaml",
"file_size": 1351,
"href": "/configuration-files/IGVFFI3940UKII/@@download/IGVFFI3940UKII.yaml.gz",
"md5sum": "c5f7793355d4f5860ecf24aa4bdd15ab",
"s3_uri": "s3://igvf-files/2024/09/18/7e64f558-b47b-499e-9329-797cf222338c/IGVFFI3940UKII.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI4478RUZF/",
"accession": "IGVFFI4478RUZF",
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T17:31:18.609770+00:00",
"file_format": "yaml",
"file_size": 1352,
"href": "/configuration-files/IGVFFI4478RUZF/@@download/IGVFFI4478RUZF.yaml.gz",
"md5sum": "1243b7257a492240a704aa938698653b",
"s3_uri": "s3://igvf-files/2024/09/18/696f9580-041a-4f6a-828e-ffb6b957c951/IGVFFI4478RUZF.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI6770YXFK/",
"accession": "IGVFFI6770YXFK",
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T17:31:12.195337+00:00",
"file_format": "yaml",
"file_size": 1349,
"href": "/configuration-files/IGVFFI6770YXFK/@@download/IGVFFI6770YXFK.yaml.gz",
"md5sum": "7e5ab202075f11ede6e46930f640684e",
"s3_uri": "s3://igvf-files/2024/09/18/bd7b5a22-3034-49b8-a389-c305bf327e15/IGVFFI6770YXFK.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI3117QSBZ/",
"accession": "IGVFFI3117QSBZ",
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T17:31:14.772745+00:00",
"file_format": "yaml",
"file_size": 1351,
"href": "/configuration-files/IGVFFI3117QSBZ/@@download/IGVFFI3117QSBZ.yaml.gz",
"md5sum": "b2722866259fa6dd0ac118bf29c93993",
"s3_uri": "s3://igvf-files/2024/09/18/9251d1c7-a3a4-4d40-bfd8-d303e4b54822/IGVFFI3117QSBZ.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI2987UBQC/",
"accession": "IGVFFI2987UBQC",
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T17:31:10.923869+00:00",
"file_format": "yaml",
"file_size": 1350,
"href": "/configuration-files/IGVFFI2987UBQC/@@download/IGVFFI2987UBQC.yaml.gz",
"md5sum": "462150e682b586ea0928b62ddc1ee7c0",
"s3_uri": "s3://igvf-files/2024/09/18/da3a5d4c-36da-46d4-a7f4-8aeec9bca217/IGVFFI2987UBQC.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI1627BQLV/",
"accession": "IGVFFI1627BQLV",
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T17:31:13.505787+00:00",
"file_format": "yaml",
"file_size": 1350,
"href": "/configuration-files/IGVFFI1627BQLV/@@download/IGVFFI1627BQLV.yaml.gz",
"md5sum": "327f5110712f536bf426e2d580c36bd0",
"s3_uri": "s3://igvf-files/2024/09/18/8a065962-5844-450e-a0cf-eea7b15ff1dc/IGVFFI1627BQLV.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI8236NZFN/",
"accession": "IGVFFI8236NZFN",
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T17:31:16.024297+00:00",
"file_format": "yaml",
"file_size": 1351,
"href": "/configuration-files/IGVFFI8236NZFN/@@download/IGVFFI8236NZFN.yaml.gz",
"md5sum": "c1d79d61ef2def89b188ac3f6a82ac34",
"s3_uri": "s3://igvf-files/2024/09/18/9683f7d6-3fc0-4e35-a41f-a83039b49643/IGVFFI8236NZFN.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI6168GEWL/",
"accession": "IGVFFI6168GEWL",
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T17:31:09.542411+00:00",
"file_format": "yaml",
"file_size": 1351,
"href": "/configuration-files/IGVFFI6168GEWL/@@download/IGVFFI6168GEWL.yaml.gz",
"md5sum": "57acf30b79d9505428f8b37a24aae2c6",
"s3_uri": "s3://igvf-files/2024/09/18/cc214f79-bd1e-420f-bd57-20d7cd46056b/IGVFFI6168GEWL.yaml.gz",
"status": "released",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS3411CFPE/"
],
"lab": {
"@id": "/labs/ali-mortazavi/",
"title": "Ali Mortazavi, UCI"
},
"notes": "Preferred_assay_titles enum Parse Split-seq has been renamed to be Parse SPLiT-seq.",
"onlist_files": [
"/tabular-files/IGVFFI2591OFQO/",
"/tabular-files/IGVFFI1138MCVX/"
],
"onlist_method": "multi",
"preferred_assay_title": "Parse SPLiT-seq",
"protocols": [
"https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-81wgbxzdylpk/v2",
"https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-14egn334ml5d/v2",
"https://www.protocols.io/view/evercode-wt-mega-v2-2-1-8epv5xxrng1b/v1",
"https://www.protocols.io/view/evercode-single-index-pcr-5jyl82k9rl2w/v1"
],
"release_timestamp": "2025-04-19T00:59:50.391402+00:00",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM1354VRSV/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM1354VRSV",
"aliases": [
"ali-mortazavi:subpool_009_67D"
],
"cellular_sub_pool": "009_67D",
"classifications": [
"tissue",
"multiplexed sample"
],
"disease_terms": [],
"institutional_certificates": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002113/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "kidney",
"term_name": "kidney"
},
{
"@id": "/sample-terms/UBERON_0002369/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "adrenal gland",
"term_name": "adrenal gland"
}
],
"status": "released",
"summary": "multiplexed sample: Mus musculus WSB/EiJ (male, 69 days) kidney tissue; Mus musculus CAST/EiJ (male, 72 days) kidney tissue; ... and 126 more samples",
"taxa": "Mus musculus",
"treatments": []
}
],
"schema_version": "26",
"sequencing_library_types": [
"mRNA enriched"
],
"status": "released",
"strand_specificity": "5 prime to 3 prime",
"submitted_by": {
"@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
"title": "Diane Trout"
},
"submitted_files_timestamp": "2023-10-12T21:43:34.489232+00:00",
"summary": "Parse SPLiT-seq",
"uuid": "9163687f-58ec-46d9-a019-7333a0ff2813"
}