{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS5913QKWA/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS5913QKWA",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep3-BinA_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM7453CDOR](/in-vitro-systems/IGVFSM7453CDOR/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM7453CDOR/"
},
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS5913QKWA](/measurement-sets/IGVFDS5913QKWA/) has sequence file(s) [IGVFFI5538EBRB](/sequence-files/IGVFFI5538EBRB/), [IGVFFI6606PLCG](/sequence-files/IGVFFI6606PLCG/), [IGVFFI4854CJNH](/sequence-files/IGVFFI4854CJNH/), [IGVFFI4880YDGX](/sequence-files/IGVFFI4880YDGX/), [IGVFFI0503TXAP](/sequence-files/IGVFFI0503TXAP/), [IGVFFI9261NDVX](/sequence-files/IGVFFI9261NDVX/), [IGVFFI0234KSKE](/sequence-files/IGVFFI0234KSKE/), [IGVFFI5830XVIE](/sequence-files/IGVFFI5830XVIE/), [IGVFFI8977YYWC](/sequence-files/IGVFFI8977YYWC/), [IGVFFI2982BLYB](/sequence-files/IGVFFI2982BLYB/), [IGVFFI1885WBEH](/sequence-files/IGVFFI1885WBEH/), [IGVFFI7184BYWH](/sequence-files/IGVFFI7184BYWH/), [IGVFFI5629WMGP](/sequence-files/IGVFFI5629WMGP/), [IGVFFI4664MANF](/sequence-files/IGVFFI4664MANF/), [IGVFFI5566BYRL](/sequence-files/IGVFFI5566BYRL/), [IGVFFI0405HATV](/sequence-files/IGVFFI0405HATV/), [IGVFFI3441EPFF](/sequence-files/IGVFFI3441EPFF/), [IGVFFI4689FPJI](/sequence-files/IGVFFI4689FPJI/), [IGVFFI7538WLJI](/sequence-files/IGVFFI7538WLJI/), [IGVFFI7416QOPH](/sequence-files/IGVFFI7416QOPH/), [IGVFFI8652HYNB](/sequence-files/IGVFFI8652HYNB/), [IGVFFI5533FKIL](/sequence-files/IGVFFI5533FKIL/), [IGVFFI5025AKHB](/sequence-files/IGVFFI5025AKHB/), [IGVFFI7490FCDL](/sequence-files/IGVFFI7490FCDL/), [IGVFFI9264QXPY](/sequence-files/IGVFFI9264QXPY/), [IGVFFI4190NQYP](/sequence-files/IGVFFI4190NQYP/), [IGVFFI9018SBSM](/sequence-files/IGVFFI9018SBSM/), [IGVFFI8450ZXUO](/sequence-files/IGVFFI8450ZXUO/), [IGVFFI5833XPZA](/sequence-files/IGVFFI5833XPZA/), [IGVFFI2088RXNC](/sequence-files/IGVFFI2088RXNC/), [IGVFFI2642HHPE](/sequence-files/IGVFFI2642HHPE/), [IGVFFI8165CTYL](/sequence-files/IGVFFI8165CTYL/), [IGVFFI3149GIXS](/sequence-files/IGVFFI3149GIXS/), [IGVFFI9788RCRL](/sequence-files/IGVFFI9788RCRL/), [IGVFFI8452SDOL](/sequence-files/IGVFFI8452SDOL/), [IGVFFI2060GXOJ](/sequence-files/IGVFFI2060GXOJ/), [IGVFFI6748GXQW](/sequence-files/IGVFFI6748GXQW/), [IGVFFI7614VLSQ](/sequence-files/IGVFFI7614VLSQ/), [IGVFFI2390FOKU](/sequence-files/IGVFFI2390FOKU/), [IGVFFI2003BZPY](/sequence-files/IGVFFI2003BZPY/), [IGVFFI0621COCJ](/sequence-files/IGVFFI0621COCJ/), [IGVFFI3376QDOE](/sequence-files/IGVFFI3376QDOE/), [IGVFFI2605SVTI](/sequence-files/IGVFFI2605SVTI/), [IGVFFI5441YEJA](/sequence-files/IGVFFI5441YEJA/), [IGVFFI2069BDCH](/sequence-files/IGVFFI2069BDCH/), [IGVFFI5728XYGQ](/sequence-files/IGVFFI5728XYGQ/), [IGVFFI6090XTHK](/sequence-files/IGVFFI6090XTHK/), [IGVFFI7951GGIK](/sequence-files/IGVFFI7951GGIK/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS5913QKWA/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS5913QKWA](/measurement-sets/IGVFDS5913QKWA/) has sequence file(s): [IGVFFI5538EBRB](/sequence-files/IGVFFI5538EBRB/), [IGVFFI6606PLCG](/sequence-files/IGVFFI6606PLCG/), [IGVFFI4854CJNH](/sequence-files/IGVFFI4854CJNH/), [IGVFFI4880YDGX](/sequence-files/IGVFFI4880YDGX/), [IGVFFI0503TXAP](/sequence-files/IGVFFI0503TXAP/), [IGVFFI9261NDVX](/sequence-files/IGVFFI9261NDVX/), [IGVFFI0234KSKE](/sequence-files/IGVFFI0234KSKE/), [IGVFFI5830XVIE](/sequence-files/IGVFFI5830XVIE/), [IGVFFI8977YYWC](/sequence-files/IGVFFI8977YYWC/), [IGVFFI2982BLYB](/sequence-files/IGVFFI2982BLYB/), [IGVFFI1885WBEH](/sequence-files/IGVFFI1885WBEH/), [IGVFFI7184BYWH](/sequence-files/IGVFFI7184BYWH/), [IGVFFI5629WMGP](/sequence-files/IGVFFI5629WMGP/), [IGVFFI4664MANF](/sequence-files/IGVFFI4664MANF/), [IGVFFI5566BYRL](/sequence-files/IGVFFI5566BYRL/), [IGVFFI0405HATV](/sequence-files/IGVFFI0405HATV/), [IGVFFI3441EPFF](/sequence-files/IGVFFI3441EPFF/), [IGVFFI4689FPJI](/sequence-files/IGVFFI4689FPJI/), [IGVFFI7538WLJI](/sequence-files/IGVFFI7538WLJI/), [IGVFFI7416QOPH](/sequence-files/IGVFFI7416QOPH/), [IGVFFI8652HYNB](/sequence-files/IGVFFI8652HYNB/), [IGVFFI5533FKIL](/sequence-files/IGVFFI5533FKIL/), [IGVFFI5025AKHB](/sequence-files/IGVFFI5025AKHB/), [IGVFFI7490FCDL](/sequence-files/IGVFFI7490FCDL/), [IGVFFI9264QXPY](/sequence-files/IGVFFI9264QXPY/), [IGVFFI4190NQYP](/sequence-files/IGVFFI4190NQYP/), [IGVFFI9018SBSM](/sequence-files/IGVFFI9018SBSM/), [IGVFFI8450ZXUO](/sequence-files/IGVFFI8450ZXUO/), [IGVFFI5833XPZA](/sequence-files/IGVFFI5833XPZA/), [IGVFFI2088RXNC](/sequence-files/IGVFFI2088RXNC/), [IGVFFI2642HHPE](/sequence-files/IGVFFI2642HHPE/), [IGVFFI8165CTYL](/sequence-files/IGVFFI8165CTYL/), [IGVFFI3149GIXS](/sequence-files/IGVFFI3149GIXS/), [IGVFFI9788RCRL](/sequence-files/IGVFFI9788RCRL/), [IGVFFI8452SDOL](/sequence-files/IGVFFI8452SDOL/), [IGVFFI2060GXOJ](/sequence-files/IGVFFI2060GXOJ/), [IGVFFI6748GXQW](/sequence-files/IGVFFI6748GXQW/), [IGVFFI7614VLSQ](/sequence-files/IGVFFI7614VLSQ/), [IGVFFI2390FOKU](/sequence-files/IGVFFI2390FOKU/), [IGVFFI2003BZPY](/sequence-files/IGVFFI2003BZPY/), [IGVFFI0621COCJ](/sequence-files/IGVFFI0621COCJ/), [IGVFFI3376QDOE](/sequence-files/IGVFFI3376QDOE/), [IGVFFI2605SVTI](/sequence-files/IGVFFI2605SVTI/), [IGVFFI5441YEJA](/sequence-files/IGVFFI5441YEJA/), [IGVFFI2069BDCH](/sequence-files/IGVFFI2069BDCH/), [IGVFFI5728XYGQ](/sequence-files/IGVFFI5728XYGQ/), [IGVFFI6090XTHK](/sequence-files/IGVFFI6090XTHK/), [IGVFFI7951GGIK](/sequence-files/IGVFFI7951GGIK/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS5913QKWA/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS5913QKWA](/measurement-sets/IGVFDS5913QKWA/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS5913QKWA/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
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],
"status": "released"
}
],
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{
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"aliases": [
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],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
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"targeted_genes": [
{
"@id": "/genes/ENSG00000108179/",
"geneid": "ENSG00000108179",
"name": "peptidylprolyl isomerase F",
"status": "released",
"symbol": "PPIF",
"synonyms": [
"rotamase F",
"CYP3",
"cyclophilin F",
"mitochondrial cyclophilin",
"peptidyl-prolyl cis-trans isomerase, mitochondrial",
"CypD",
"Cyp-D",
"cyclophilin 3",
"cyclophilin D",
"CyP-M",
"peptidyl-prolyl cis-trans isomerase F, mitochondrial",
"PPIase F"
]
}
],
"uuid": "d49b8a0c-bcfe-44d9-a53c-786dd3bf2448"
}