{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS5892YXLI",
"aliases": [
"bradley-bernstein:scATAC Lib 18",
"buenrostro-bernstein:scATAC Lib 18"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"status": "released",
"term_name": "single-cell ATAC-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM8105KQWG](/primary-cells/IGVFSM8105KQWG/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM8105KQWG/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS5892YXLI](/measurement-sets/IGVFDS5892YXLI/) has sequence file(s): [IGVFFI3682BVWW](/sequence-files/IGVFFI3682BVWW/), [IGVFFI6922FZJB](/sequence-files/IGVFFI6922FZJB/), [IGVFFI6454ILRW](/sequence-files/IGVFFI6454ILRW/), [IGVFFI4096OHIE](/sequence-files/IGVFFI4096OHIE/), [IGVFFI2551KLBL](/sequence-files/IGVFFI2551KLBL/), [IGVFFI5072XYMA](/sequence-files/IGVFFI5072XYMA/), [IGVFFI3202KUUI](/sequence-files/IGVFFI3202KUUI/), [IGVFFI9350GIEO](/sequence-files/IGVFFI9350GIEO/), [IGVFFI0583ZODU](/sequence-files/IGVFFI0583ZODU/), [IGVFFI0397JEZE](/sequence-files/IGVFFI0397JEZE/), [IGVFFI0982DOQR](/sequence-files/IGVFFI0982DOQR/), [IGVFFI6154VYJD](/sequence-files/IGVFFI6154VYJD/), [IGVFFI4900OTRO](/sequence-files/IGVFFI4900OTRO/), [IGVFFI6533AWYK](/sequence-files/IGVFFI6533AWYK/), [IGVFFI9460ABCN](/sequence-files/IGVFFI9460ABCN/), [IGVFFI3631FUWX](/sequence-files/IGVFFI3631FUWX/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS5892YXLI/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS5892YXLI](/measurement-sets/IGVFDS5892YXLI/) has an `assay_term` of single-cell ATAC-seq but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS5892YXLI/"
}
]
},
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"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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"aliases": [
"bradley-bernstein:BioSam 4568_SS-PKR 3",
"buenrostro-bernstein:BioSam 4568_SS-PKR 3"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 3), male, Homo sapiens (37 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:47:09.196922+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "ba917082-bb99-4baf-bb1b-a5ae803600a5"
}