{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS5863OHYL/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS5863OHYL",
"aliases": [
"bradley-bernstein:scRNA Lib 31",
"buenrostro-bernstein:scRNA Lib 31"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002631/",
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM4055GPWI](/primary-cells/IGVFSM4055GPWI/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM4055GPWI/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS5863OHYL](/measurement-sets/IGVFDS5863OHYL/) has sequence file(s): [IGVFFI8867DVKL](/sequence-files/IGVFFI8867DVKL/), [IGVFFI9512LSZG](/sequence-files/IGVFFI9512LSZG/), [IGVFFI9647TFOI](/sequence-files/IGVFFI9647TFOI/), [IGVFFI4624OIUF](/sequence-files/IGVFFI4624OIUF/), [IGVFFI1637PBLS](/sequence-files/IGVFFI1637PBLS/), [IGVFFI9604TMIL](/sequence-files/IGVFFI9604TMIL/), [IGVFFI8486VIPQ](/sequence-files/IGVFFI8486VIPQ/), [IGVFFI6864MJWF](/sequence-files/IGVFFI6864MJWF/), [IGVFFI0177ROFG](/sequence-files/IGVFFI0177ROFG/), [IGVFFI4874VQHA](/sequence-files/IGVFFI4874VQHA/), [IGVFFI4633VYAX](/sequence-files/IGVFFI4633VYAX/), [IGVFFI1549USAR](/sequence-files/IGVFFI1549USAR/), [IGVFFI0952DGYB](/sequence-files/IGVFFI0952DGYB/), [IGVFFI2153VKLD](/sequence-files/IGVFFI2153VKLD/), [IGVFFI9302FAEP](/sequence-files/IGVFFI9302FAEP/), [IGVFFI3226YRCJ](/sequence-files/IGVFFI3226YRCJ/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS5863OHYL/"
}
],
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{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS5863OHYL](/measurement-sets/IGVFDS5863OHYL/) has an `assay_term` of single-cell RNA sequencing assay but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS5863OHYL/"
}
]
},
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"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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"buenrostro-bernstein:BioSam 4563_SS-PKR 6"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 6), male, Homo sapiens (26 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:23:43.633122+00:00",
"summary": "single-cell RNA sequencing assay (SHARE-seq)",
"uuid": "16cb9605-b176-4232-b507-202ceec153a1"
}