{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS5856FZKF/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS5856FZKF",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep2-FFrep2-BinB_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS5856FZKF](/measurement-sets/IGVFDS5856FZKF/) has sequence file(s) [IGVFFI4047BBPJ](/sequence-files/IGVFFI4047BBPJ/), [IGVFFI6397SUJC](/sequence-files/IGVFFI6397SUJC/), [IGVFFI5018WXNV](/sequence-files/IGVFFI5018WXNV/), [IGVFFI0683KABS](/sequence-files/IGVFFI0683KABS/), [IGVFFI3260ODND](/sequence-files/IGVFFI3260ODND/), [IGVFFI1815CRNJ](/sequence-files/IGVFFI1815CRNJ/), [IGVFFI2823RWAW](/sequence-files/IGVFFI2823RWAW/), [IGVFFI1020OWEB](/sequence-files/IGVFFI1020OWEB/), [IGVFFI6845LMPY](/sequence-files/IGVFFI6845LMPY/), [IGVFFI7830NIBI](/sequence-files/IGVFFI7830NIBI/), [IGVFFI7347GBNW](/sequence-files/IGVFFI7347GBNW/), [IGVFFI9237NRDU](/sequence-files/IGVFFI9237NRDU/), [IGVFFI3549ITFF](/sequence-files/IGVFFI3549ITFF/), [IGVFFI1023NAVB](/sequence-files/IGVFFI1023NAVB/), [IGVFFI4791XXDL](/sequence-files/IGVFFI4791XXDL/), [IGVFFI6478TGPB](/sequence-files/IGVFFI6478TGPB/), [IGVFFI9505ZJTP](/sequence-files/IGVFFI9505ZJTP/), [IGVFFI3463QFUD](/sequence-files/IGVFFI3463QFUD/), [IGVFFI4859XPET](/sequence-files/IGVFFI4859XPET/), [IGVFFI1282FWJQ](/sequence-files/IGVFFI1282FWJQ/), [IGVFFI4721AXTO](/sequence-files/IGVFFI4721AXTO/), [IGVFFI6748XRYL](/sequence-files/IGVFFI6748XRYL/), [IGVFFI2520CEXS](/sequence-files/IGVFFI2520CEXS/), [IGVFFI2427CLUI](/sequence-files/IGVFFI2427CLUI/), [IGVFFI5551STSB](/sequence-files/IGVFFI5551STSB/), [IGVFFI1458HQEB](/sequence-files/IGVFFI1458HQEB/), [IGVFFI7502LMVQ](/sequence-files/IGVFFI7502LMVQ/), [IGVFFI1560IQYJ](/sequence-files/IGVFFI1560IQYJ/), [IGVFFI0578DORF](/sequence-files/IGVFFI0578DORF/), [IGVFFI6029OCBI](/sequence-files/IGVFFI6029OCBI/), [IGVFFI1070KTCG](/sequence-files/IGVFFI1070KTCG/), [IGVFFI9545EZRY](/sequence-files/IGVFFI9545EZRY/), [IGVFFI7429CIJF](/sequence-files/IGVFFI7429CIJF/), [IGVFFI2031SKIL](/sequence-files/IGVFFI2031SKIL/), [IGVFFI2351TLFO](/sequence-files/IGVFFI2351TLFO/), [IGVFFI6533YLMJ](/sequence-files/IGVFFI6533YLMJ/), [IGVFFI7734RLWM](/sequence-files/IGVFFI7734RLWM/), [IGVFFI4402QMQD](/sequence-files/IGVFFI4402QMQD/), [IGVFFI4075FCRP](/sequence-files/IGVFFI4075FCRP/), [IGVFFI7199EJUV](/sequence-files/IGVFFI7199EJUV/), [IGVFFI3158RNKH](/sequence-files/IGVFFI3158RNKH/), [IGVFFI6263BSHT](/sequence-files/IGVFFI6263BSHT/), [IGVFFI6735AEPI](/sequence-files/IGVFFI6735AEPI/), [IGVFFI1130XONB](/sequence-files/IGVFFI1130XONB/), [IGVFFI4296KZTZ](/sequence-files/IGVFFI4296KZTZ/), [IGVFFI7113WZPT](/sequence-files/IGVFFI7113WZPT/), [IGVFFI5742CFJG](/sequence-files/IGVFFI5742CFJG/), [IGVFFI1145KNZE](/sequence-files/IGVFFI1145KNZE/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS5856FZKF/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS5856FZKF](/measurement-sets/IGVFDS5856FZKF/) has sequence file(s): [IGVFFI4047BBPJ](/sequence-files/IGVFFI4047BBPJ/), [IGVFFI6397SUJC](/sequence-files/IGVFFI6397SUJC/), [IGVFFI5018WXNV](/sequence-files/IGVFFI5018WXNV/), [IGVFFI0683KABS](/sequence-files/IGVFFI0683KABS/), [IGVFFI3260ODND](/sequence-files/IGVFFI3260ODND/), [IGVFFI1815CRNJ](/sequence-files/IGVFFI1815CRNJ/), [IGVFFI2823RWAW](/sequence-files/IGVFFI2823RWAW/), [IGVFFI1020OWEB](/sequence-files/IGVFFI1020OWEB/), [IGVFFI6845LMPY](/sequence-files/IGVFFI6845LMPY/), [IGVFFI7830NIBI](/sequence-files/IGVFFI7830NIBI/), [IGVFFI7347GBNW](/sequence-files/IGVFFI7347GBNW/), [IGVFFI9237NRDU](/sequence-files/IGVFFI9237NRDU/), [IGVFFI3549ITFF](/sequence-files/IGVFFI3549ITFF/), [IGVFFI1023NAVB](/sequence-files/IGVFFI1023NAVB/), [IGVFFI4791XXDL](/sequence-files/IGVFFI4791XXDL/), [IGVFFI6478TGPB](/sequence-files/IGVFFI6478TGPB/), [IGVFFI9505ZJTP](/sequence-files/IGVFFI9505ZJTP/), [IGVFFI3463QFUD](/sequence-files/IGVFFI3463QFUD/), [IGVFFI4859XPET](/sequence-files/IGVFFI4859XPET/), [IGVFFI1282FWJQ](/sequence-files/IGVFFI1282FWJQ/), [IGVFFI4721AXTO](/sequence-files/IGVFFI4721AXTO/), [IGVFFI6748XRYL](/sequence-files/IGVFFI6748XRYL/), [IGVFFI2520CEXS](/sequence-files/IGVFFI2520CEXS/), [IGVFFI2427CLUI](/sequence-files/IGVFFI2427CLUI/), [IGVFFI5551STSB](/sequence-files/IGVFFI5551STSB/), [IGVFFI1458HQEB](/sequence-files/IGVFFI1458HQEB/), [IGVFFI7502LMVQ](/sequence-files/IGVFFI7502LMVQ/), [IGVFFI1560IQYJ](/sequence-files/IGVFFI1560IQYJ/), [IGVFFI0578DORF](/sequence-files/IGVFFI0578DORF/), [IGVFFI6029OCBI](/sequence-files/IGVFFI6029OCBI/), [IGVFFI1070KTCG](/sequence-files/IGVFFI1070KTCG/), [IGVFFI9545EZRY](/sequence-files/IGVFFI9545EZRY/), [IGVFFI7429CIJF](/sequence-files/IGVFFI7429CIJF/), [IGVFFI2031SKIL](/sequence-files/IGVFFI2031SKIL/), [IGVFFI2351TLFO](/sequence-files/IGVFFI2351TLFO/), [IGVFFI6533YLMJ](/sequence-files/IGVFFI6533YLMJ/), [IGVFFI7734RLWM](/sequence-files/IGVFFI7734RLWM/), [IGVFFI4402QMQD](/sequence-files/IGVFFI4402QMQD/), [IGVFFI4075FCRP](/sequence-files/IGVFFI4075FCRP/), [IGVFFI7199EJUV](/sequence-files/IGVFFI7199EJUV/), [IGVFFI3158RNKH](/sequence-files/IGVFFI3158RNKH/), [IGVFFI6263BSHT](/sequence-files/IGVFFI6263BSHT/), [IGVFFI6735AEPI](/sequence-files/IGVFFI6735AEPI/), [IGVFFI1130XONB](/sequence-files/IGVFFI1130XONB/), [IGVFFI4296KZTZ](/sequence-files/IGVFFI4296KZTZ/), [IGVFFI7113WZPT](/sequence-files/IGVFFI7113WZPT/), [IGVFFI5742CFJG](/sequence-files/IGVFFI5742CFJG/), [IGVFFI1145KNZE](/sequence-files/IGVFFI1145KNZE/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS5856FZKF/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM7961LTZR](/in-vitro-systems/IGVFSM7961LTZR/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM7961LTZR/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS5856FZKF](/measurement-sets/IGVFDS5856FZKF/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS5856FZKF/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
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],
"status": "released"
}
],
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"donors": [
{
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"aliases": [
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],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
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"targeted_genes": [
{
"@id": "/genes/ENSG00000108179/",
"geneid": "ENSG00000108179",
"name": "peptidylprolyl isomerase F",
"status": "released",
"symbol": "PPIF",
"synonyms": [
"rotamase F",
"CYP3",
"cyclophilin F",
"mitochondrial cyclophilin",
"peptidyl-prolyl cis-trans isomerase, mitochondrial",
"CypD",
"Cyp-D",
"cyclophilin 3",
"cyclophilin D",
"CyP-M",
"peptidyl-prolyl cis-trans isomerase F, mitochondrial",
"PPIase F"
]
}
],
"uuid": "6c8ecad6-445f-4b0a-b1ab-aea54add7456"
}