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MeasurementSet
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IGVFDS5800WXVK
IGVFDS5800WXVK
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 82 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_X041_G5_ATAC
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0809CQHE
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223JJTLT3
4
1.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1142ZBCP
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223JJTLT3
1
1.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1156ICLP
fastq
reads
I1
1
Illumina NovaSeq X
223JJTLT3
2
444 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1911BNZD
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223JJTLT3
1
1.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2037LASD
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJTLT3
3
1.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2675FBEA
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223JJTLT3
2
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3387BBTQ
fastq
reads
I1
1
Illumina NovaSeq X
223JJTLT3
3
440 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4460ZEGN
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJTLT3
2
2.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5085DLPK
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223JJTLT3
3
1.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5718BNHB
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223JJTLT3
4
1.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM4462GKQC
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
multiple sclerosis
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 82 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0698ZMAQ
igvf:corces_donor_BANN1569
male
Homo sapiens
IGVFDO0966KXTA
igvf:corces_donor_BANN0138
female
Homo sapiens
IGVFDO1469WVVS
igvf:corces_donor_BANN1063
male
Homo sapiens
IGVFDO3471KCPD
igvf:corces_donor_BANN1647
male
Homo sapiens
IGVFDO3795BUZW
igvf:corces_donor_BANN1311
male
Homo sapiens
IGVFDO4170HAEN
igvf:corces_donor_BANN1864
male
Homo sapiens
IGVFDO4273OHGB
igvf:corces_donor_BANN0322
female
Homo sapiens
IGVFDO5228HTJC
igvf:corces_donor_BANN1839
female
Homo sapiens
IGVFDO8155MCUV
igvf:corces_donor_BANN0437
female
Homo sapiens
IGVFDO8344LUQZ
igvf:corces_donor_BANN0621
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS2612AYOV
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_X041_G5_RNA
Ryan Corces, Gladstone Institute UCSF
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF