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IGVFDS5786SCIX

released
File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
  • multiplexed sample: H7-hESC differentiated cell specimen, female, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days, male, Homo sapiens; ... and 10 more samples
Protocols
Aliases
ansuman-satpathy:snRNA-seq_igvf11_10x2

Sequencing Results (Illumina)

8 items
Read Names
fastq
reads
I2
1
HGVFMDSX7
3
4.0 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
Read 1
HGVFMDSX7
4
36 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
Read 2
HGVFMDSX7
4
31 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
Read 1
HGVFMDSX7
3
35 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
HGVFMDSX7
3
3.2 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I2
1
HGVFMDSX7
4
3.9 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
Read 2
HGVFMDSX7
3
31 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
HGVFMDSX7
4
3.2 GB
Ansuman Satpathy, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: H7-hESC differentiated cell specimen, female, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days, male, Homo sapiens; ... and 10 more samples

Donors

2 items
Aliases
  • igvf:donor_of_WTC11
male
Homo sapiens
  • igvf:donor_of_h7
female
Homo sapiens

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
  • ansuman-satpathy:igvf11_analysis_set
Ansuman Satpathy, Stanford

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
  • ansuman-satpathy:snATAC-seq_igvf11_10x2
Ansuman Satpathy, Stanford

Auxiliary Datasets

1 item
Accession
Type
Summary
Files
Aliases
Lab
AuxiliarySet
lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
  • ansuman-satpathy:multiseq_igvf11_10x2
Ansuman Satpathy, Stanford

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford