{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS5785EADX/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS5785EADX",
"aliases": [
"buenrostro-bernstein:scRNA Lib 449"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002631/",
"assay_slims": [
"gene expression"
],
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS5785EADX](/measurement-sets/IGVFDS5785EADX/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS5785EADX/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS5785EADX](/measurement-sets/IGVFDS5785EADX/) has in progress subobject tabular file [IGVFFI0400MBIM](/tabular-files/IGVFFI0400MBIM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS5785EADX/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS5785EADX](/measurement-sets/IGVFDS5785EADX/) has in progress subobject tabular file [IGVFFI5522PXUM](/tabular-files/IGVFFI5522PXUM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS5785EADX/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM6548PKFU](/in-vitro-systems/IGVFSM6548PKFU/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM6548PKFU/"
}
],
"NOT_COMPLIANT": [
{
"category": "missing strand specificity",
"detail": "Measurement set [IGVFDS5785EADX](/measurement-sets/IGVFDS5785EADX/) is missing required `strand_specificity`. Gene expression based assays are expected to specify strand specificity.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_strand_specificity",
"path": "/measurement-sets/IGVFDS5785EADX/"
}
]
},
"award": {
"@id": "/awards/HG011986/",
"component": "mapping",
"contact_pi": {
"@id": "/users/33c6eb70-e143-4f77-9661-4b3905737daa/",
"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
"control_for": [],
"controlled_access": true,
"creation_timestamp": "2024-08-20T14:57:11.382212+00:00",
"data_use_limitation_summaries": [
"GRU"
],
"donors": [
{
"@id": "/human-donors/IGVFDO7440MWLG/",
"accession": "IGVFDO7440MWLG",
"aliases": [
"buenrostro-bernstein:Donor 1846"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0452ROLO/",
"accession": "IGVFDO0452ROLO",
"aliases": [
"buenrostro-bernstein:Donor 1867"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6704FGWL/",
"accession": "IGVFDO6704FGWL",
"aliases": [
"buenrostro-bernstein:Donor 1875"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4222QOSB/",
"accession": "IGVFDO4222QOSB",
"aliases": [
"buenrostro-bernstein:Donor 1827"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1697JGEF/",
"accession": "IGVFDO1697JGEF",
"aliases": [
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],
"sex": "unspecified",
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"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0436YOXD/",
"accession": "IGVFDO0436YOXD",
"aliases": [
"buenrostro-bernstein:Donor 1745"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6553AADC/",
"accession": "IGVFDO6553AADC",
"aliases": [
"buenrostro-bernstein:Donor 1841"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1656HYLL/",
"accession": "IGVFDO1656HYLL",
"aliases": [
"buenrostro-bernstein:Donor 1847"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2343ZVKW/",
"accession": "IGVFDO2343ZVKW",
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"buenrostro-bernstein:Donor 1869"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1778GJAD/",
"accession": "IGVFDO1778GJAD",
"aliases": [
"buenrostro-bernstein:Donor 1778"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0916PWWE/",
"accession": "IGVFDO0916PWWE",
"aliases": [
"buenrostro-bernstein:Donor 1845"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0233FJJF/",
"accession": "IGVFDO0233FJJF",
"aliases": [
"buenrostro-bernstein:Donor 1834"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9707NUOC/",
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0166JLWT/",
"accession": "IGVFDO0166JLWT",
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"buenrostro-bernstein:Donor 1816"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0995XOJH/",
"accession": "IGVFDO0995XOJH",
"aliases": [
"buenrostro-bernstein:Donor 1872"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6316KUFG/",
"accession": "IGVFDO6316KUFG",
"aliases": [
"buenrostro-bernstein:Donor 1871"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3937NOVL/",
"accession": "IGVFDO3937NOVL",
"aliases": [
"buenrostro-bernstein:Donor 1858"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7567RWAK/",
"accession": "IGVFDO7567RWAK",
"aliases": [
"buenrostro-bernstein:Donor 1857"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2015BBZM/",
"accession": "IGVFDO2015BBZM",
"aliases": [
"buenrostro-bernstein:Donor 1813"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5257YVJL/",
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"aliases": [
"buenrostro-bernstein:Donor 1825"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3154SUBV/",
"accession": "IGVFDO3154SUBV",
"aliases": [
"buenrostro-bernstein:Donor 1746"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1502TPVD/",
"accession": "IGVFDO1502TPVD",
"aliases": [
"buenrostro-bernstein:Donor 1849"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8250RHCQ/",
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"buenrostro-bernstein:Donor 1854"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0285FFEG/",
"accession": "IGVFDO0285FFEG",
"aliases": [
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2372UULO/",
"accession": "IGVFDO2372UULO",
"aliases": [
"buenrostro-bernstein:Donor 1840"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6837BSOS/",
"accession": "IGVFDO6837BSOS",
"aliases": [
"buenrostro-bernstein:Donor 1812"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7476FWEA/",
"accession": "IGVFDO7476FWEA",
"aliases": [
"buenrostro-bernstein:Donor 1851"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4451SLQW/",
"accession": "IGVFDO4451SLQW",
"aliases": [
"buenrostro-bernstein:Donor 1789"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2131TKFT/",
"accession": "IGVFDO2131TKFT",
"aliases": [
"buenrostro-bernstein:Donor 1811"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5895ABMM/",
"accession": "IGVFDO5895ABMM",
"aliases": [
"buenrostro-bernstein:Donor 1824"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2453FLSI/",
"accession": "IGVFDO2453FLSI",
"aliases": [
"buenrostro-bernstein:Donor 1832"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3364ORGK/",
"accession": "IGVFDO3364ORGK",
"aliases": [
"buenrostro-bernstein:Donor 1897"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7956CWXZ/",
"accession": "IGVFDO7956CWXZ",
"aliases": [
"buenrostro-bernstein:Donor 1821"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7983CLUG/",
"accession": "IGVFDO7983CLUG",
"aliases": [
"buenrostro-bernstein:Donor 1852"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0144AKUR/",
"accession": "IGVFDO0144AKUR",
"aliases": [
"buenrostro-bernstein:Donor 1850"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6556DSRS/",
"accession": "IGVFDO6556DSRS",
"aliases": [
"buenrostro-bernstein:Donor 1848"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1318DUVG/",
"accession": "IGVFDO1318DUVG",
"aliases": [
"buenrostro-bernstein:Donor 1833"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0273LMQQ/",
"accession": "IGVFDO0273LMQQ",
"aliases": [
"buenrostro-bernstein:Donor 1876"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8979DYIF/",
"accession": "IGVFDO8979DYIF",
"aliases": [
"buenrostro-bernstein:Donor 1743"
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"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0392YIJG/",
"accession": "IGVFDO0392YIJG",
"aliases": [
"buenrostro-bernstein:Donor 1892"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4689NFPC/",
"accession": "IGVFDO4689NFPC",
"aliases": [
"buenrostro-bernstein:Donor 1770"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5829IPZL/",
"accession": "IGVFDO5829IPZL",
"aliases": [
"buenrostro-bernstein:Donor 1772"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8727EFXZ/",
"accession": "IGVFDO8727EFXZ",
"aliases": [
"buenrostro-bernstein:Donor 1831"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6890GKJS/",
"accession": "IGVFDO6890GKJS",
"aliases": [
"buenrostro-bernstein:Donor 1836"
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"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4141QBHD/",
"accession": "IGVFDO4141QBHD",
"aliases": [
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"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9594EWNE/",
"accession": "IGVFDO9594EWNE",
"aliases": [
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"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3469EFJR/",
"accession": "IGVFDO3469EFJR",
"aliases": [
"buenrostro-bernstein:Donor 1741"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9402EPTG/",
"accession": "IGVFDO9402EPTG",
"aliases": [
"buenrostro-bernstein:Donor 1829"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9737GFZX/",
"accession": "IGVFDO9737GFZX",
"aliases": [
"buenrostro-bernstein:Donor 1839"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0143YSWQ/",
"accession": "IGVFDO0143YSWQ",
"aliases": [
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6720KIII/",
"accession": "IGVFDO6720KIII",
"aliases": [
"buenrostro-bernstein:Donor 1868"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0527HIIJ/",
"accession": "IGVFDO0527HIIJ",
"aliases": [
"buenrostro-bernstein:Donor 1838"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2028ZXZQ/",
"accession": "IGVFDO2028ZXZQ",
"aliases": [
"buenrostro-bernstein:Donor 1820"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5446TLJJ/",
"accession": "IGVFDO5446TLJJ",
"aliases": [
"buenrostro-bernstein:Donor 1894"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6675DJLJ/",
"accession": "IGVFDO6675DJLJ",
"aliases": [
"buenrostro-bernstein:Donor 1837"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8532BOID/",
"accession": "IGVFDO8532BOID",
"aliases": [
"buenrostro-bernstein:Donor 1823"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9301UFXR/",
"accession": "IGVFDO9301UFXR",
"aliases": [
"buenrostro-bernstein:Donor 1815"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2664ZLXL/",
"accession": "IGVFDO2664ZLXL",
"aliases": [
"buenrostro-bernstein:Donor 1891"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0875HNRV/",
"accession": "IGVFDO0875HNRV",
"aliases": [
"buenrostro-bernstein:Donor 1895"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3707NTZB/",
"accession": "IGVFDO3707NTZB",
"aliases": [
"buenrostro-bernstein:Donor 1853"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5333XVCI/",
"accession": "IGVFDO5333XVCI",
"aliases": [
"buenrostro-bernstein:Donor 1818"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5074GHND/",
"accession": "IGVFDO5074GHND",
"aliases": [
"buenrostro-bernstein:Donor 1890"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1429GCHH/",
"accession": "IGVFDO1429GCHH",
"aliases": [
"buenrostro-bernstein:Donor 1810"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9942ECYN/",
"accession": "IGVFDO9942ECYN",
"aliases": [
"buenrostro-bernstein:Donor 1742"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8404YTWG/",
"accession": "IGVFDO8404YTWG",
"aliases": [
"buenrostro-bernstein:Donor 1865"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3170VPEQ/",
"accession": "IGVFDO3170VPEQ",
"aliases": [
"buenrostro-bernstein:Donor 1864"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2298PENP/",
"accession": "IGVFDO2298PENP",
"aliases": [
"buenrostro-bernstein:Donor 1879"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6295KHUE/",
"accession": "IGVFDO6295KHUE",
"aliases": [
"buenrostro-bernstein:Donor 1863"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0455AULY/",
"accession": "IGVFDO0455AULY",
"aliases": [
"buenrostro-bernstein:Donor 1814"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6180JBWH/",
"accession": "IGVFDO6180JBWH",
"aliases": [
"buenrostro-bernstein:Donor 1855"
],
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{
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},
{
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},
{
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},
{
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"certificate_identifier": "IP113-16",
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"status": "released"
},
{
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"certificate_identifier": "IP113-18",
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},
{
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"certificate_identifier": "IP113-19",
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},
{
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}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004905/",
"@type": [
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"OntologyTerm",
"Item"
],
"status": "released",
"summary": "induced pluripotent stem cell",
"term_name": "induced pluripotent stem cell"
}
],
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"summary": "Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to hepatic oval stem cell for 7 days (cellular sub pool: SS-PKR 188)",
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"status": "released",
"term_name": "hepatic oval stem cell"
},
"taxa": "Homo sapiens"
}
],
"schema_version": "26",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-08-20T15:07:26.465565+00:00",
"summary": "single-cell RNA sequencing assay (SHARE-seq)",
"uuid": "c2e7d6bc-a5e0-4a1e-9960-cf1c6f8e1424"
}