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INDEXED
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MeasurementSet
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IGVFDS5717NYNW
IGVFDS5717NYNW
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (female, 52 years) posterior cingulate gyrus tissue; Homo sapiens (male, 87 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP023_G4_ATAC
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1096ZJQD
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223HC3LT3
1
2.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1285GMWN
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223HC3LT3
2
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2149XGEU
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223HC3LT3
2
2.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2788QFAL
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223HC3LT3
1
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3356GQBT
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223HC3LT3
4
2.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3669XDPF
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223HC3LT3
3
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3765VXGH
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223HC3LT3
3
2.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4488VQBF
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223HC3LT3
2
2.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4896FGVP
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223HC3LT3
3
2.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5921UZJH
fastq
reads
I1
1
Illumina NovaSeq X
223HC3LT3
2
490 MB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM9853HKYG
MultiplexedSample
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 52 years) posterior cingulate gyrus tissue; Homo sapiens (male, 87 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO1052TZWO
igvf:corces_donor_BANN1851
male
Homo sapiens
IGVFDO1278CNID
igvf:corces_donor_BANN1506
male
Homo sapiens
IGVFDO3795BUZW
igvf:corces_donor_BANN1311
male
Homo sapiens
IGVFDO4438WASY
igvf:corces_donor_BANN1644
male
Homo sapiens
IGVFDO5228HTJC
igvf:corces_donor_BANN1839
female
Homo sapiens
IGVFDO5949WFOO
igvf:corces_donor_BANN1957
male
Homo sapiens
IGVFDO6316TGCK
igvf:corces_donor_BANN1814
male
Homo sapiens
IGVFDO6489DOPG
igvf:corces_donor_BANN2118
female
Homo sapiens
IGVFDO8451NMBP
igvf:corces_donor_BANN1756
male
Homo sapiens
IGVFDO8891KXRJ
igvf:corces_donor_BANN1737
female
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS8659QWPN
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP023_G4_RNA
Ryan Corces, Gladstone Institute UCSF
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF