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INDEXED
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MeasurementSet
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IGVFDS5710EPSM
IGVFDS5710EPSM
released
GRU
Json view
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 173)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
buenrostro-bernstein:scATAC Lib 405
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
33 items
1
2
3
4
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0110GSIM
fastq
reads
R2
8925
Read 2
IGVFFI2309TDNN
Illumina NovaSeq X
22LMVNLT4
1.0 GB
Jason Buenrostro, Broad
validated
IGVFFI0759UPQZ
fastq
reads
I1
8637
Barcode index
IGVFFI7859JKHK
Illumina NovaSeq X
22LMVNLT4
660 MB
Jason Buenrostro, Broad
validated
IGVFFI0788HRZE
fastq
reads
R2
3998
Read 2
IGVFFI0270YDUC
Illumina NovaSeq X
22523KLT3
1.0 GB
Jason Buenrostro, Broad
validated
IGVFFI0834ODGK
fastq
reads
R1
9021
Read 1
IGVFFI5929DPIH
Illumina NovaSeq X
22LMVNLT4
1.1 GB
Jason Buenrostro, Broad
validated
IGVFFI0981CPFS
fastq
reads
I1
8445
Barcode index
IGVFFI5979JEKB
Illumina NovaSeq X
22LMVNLT4
674 MB
Jason Buenrostro, Broad
validated
IGVFFI2032NEJJ
fastq
reads
R1
3998
Read 1
IGVFFI0270YDUC
Illumina NovaSeq X
22523KLT3
2.1 GB
Jason Buenrostro, Broad
validated
IGVFFI2474BDRL
fastq
reads
I1
4070
Barcode index
IGVFFI0552EGAJ
Illumina NovaSeq X
22523KLT3
878 MB
Jason Buenrostro, Broad
validated
IGVFFI2515OKSC
fastq
reads
R1
8637
Read 1
IGVFFI7859JKHK
Illumina NovaSeq X
22LMVNLT4
1.1 GB
Jason Buenrostro, Broad
validated
IGVFFI2750HOVM
fastq
reads
R2
4070
Read 2
IGVFFI0552EGAJ
Illumina NovaSeq X
22523KLT3
1.0 GB
Jason Buenrostro, Broad
validated
IGVFFI2962WDJW
fastq
reads
I1
9021
Barcode index
IGVFFI5929DPIH
Illumina NovaSeq X
22LMVNLT4
647 MB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM9181DMVC
InVitroSystem
induced pluripotent stem cell
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 173)
Donors
89 items
1
2
3
4
5
9
Accession
Aliases
Sex
Taxa
IGVFDO0080AJWC
buenrostro-bernstein:Donor 1719
unspecified
Homo sapiens
IGVFDO0188QZTI
buenrostro-bernstein:Donor 1735
unspecified
Homo sapiens
IGVFDO0436YOXD
buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
IGVFDO0508ZIBJ
buenrostro-bernstein:Donor 1681
unspecified
Homo sapiens
IGVFDO0533MSQJ
buenrostro-bernstein:Donor 1665
unspecified
Homo sapiens
IGVFDO0554TWWH
buenrostro-bernstein:Donor 1663
unspecified
Homo sapiens
IGVFDO0673LUEU
buenrostro-bernstein:Donor 1661
unspecified
Homo sapiens
IGVFDO0817QBZD
buenrostro-bernstein:Donor 1675
unspecified
Homo sapiens
IGVFDO0823IGCQ
buenrostro-bernstein:Donor 1694
unspecified
Homo sapiens
IGVFDO0993WNIW
buenrostro-bernstein:Donor 1668
unspecified
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS9017GOUG
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 360
Jason Buenrostro, Broad