{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS5682MSPJ",
"aliases": [
"bradley-bernstein:scRNA Lib 26",
"buenrostro-bernstein:scRNA Lib 26"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002631/",
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM0894LXUU](/primary-cells/IGVFSM0894LXUU/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM0894LXUU/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS5682MSPJ](/measurement-sets/IGVFDS5682MSPJ/) has sequence file(s): [IGVFFI7911UYER](/sequence-files/IGVFFI7911UYER/), [IGVFFI7813UPYQ](/sequence-files/IGVFFI7813UPYQ/), [IGVFFI2549JRJP](/sequence-files/IGVFFI2549JRJP/), [IGVFFI8773YEYG](/sequence-files/IGVFFI8773YEYG/), [IGVFFI7695ZPGH](/sequence-files/IGVFFI7695ZPGH/), [IGVFFI0230TQAS](/sequence-files/IGVFFI0230TQAS/), [IGVFFI0037EXYL](/sequence-files/IGVFFI0037EXYL/), [IGVFFI4625AZDK](/sequence-files/IGVFFI4625AZDK/), [IGVFFI2713IEIF](/sequence-files/IGVFFI2713IEIF/), [IGVFFI2299VFNH](/sequence-files/IGVFFI2299VFNH/), [IGVFFI5488NFNV](/sequence-files/IGVFFI5488NFNV/), [IGVFFI8861AKJO](/sequence-files/IGVFFI8861AKJO/), [IGVFFI4345NEAK](/sequence-files/IGVFFI4345NEAK/), [IGVFFI3797ASFT](/sequence-files/IGVFFI3797ASFT/), [IGVFFI2686JUQG](/sequence-files/IGVFFI2686JUQG/), [IGVFFI5429DDIY](/sequence-files/IGVFFI5429DDIY/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS5682MSPJ/"
}
],
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{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS5682MSPJ](/measurement-sets/IGVFDS5682MSPJ/) has an `assay_term` of single-cell RNA sequencing assay but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
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"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS5682MSPJ/"
}
]
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}
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"submitted_files_timestamp": "2024-02-12T21:25:29.625642+00:00",
"summary": "single-cell RNA sequencing assay (SHARE-seq)",
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}