{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS5614USRJ/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS5614USRJ",
"aliases": [
"igvf:corces_measurementSet_RP030_G1_RNA"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003109/",
"assay_slims": [
"gene expression"
],
"status": "released",
"term_name": "single-nucleus RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO4170HAEN](/human-donors/IGVFDO4170HAEN/) has in progress subobject phenotypic feature [aa4cf396-805f-4d46-a35a-3f5592ddc346](/phenotypic-features/aa4cf396-805f-4d46-a35a-3f5592ddc346/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO4170HAEN/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO4170HAEN](/human-donors/IGVFDO4170HAEN/) has in progress subobject phenotypic feature [18594154-e391-440a-8a78-4125804a3c04](/phenotypic-features/18594154-e391-440a-8a78-4125804a3c04/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO4170HAEN/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO4170HAEN](/human-donors/IGVFDO4170HAEN/) has in progress subobject phenotypic feature [2f322a5f-1431-487e-8ca5-7646bb63ac0b](/phenotypic-features/2f322a5f-1431-487e-8ca5-7646bb63ac0b/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO4170HAEN/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO4170HAEN](/human-donors/IGVFDO4170HAEN/) has in progress subobject phenotypic feature [66fe5873-8396-48ca-996e-7fae115d714b](/phenotypic-features/66fe5873-8396-48ca-996e-7fae115d714b/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO4170HAEN/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO4170HAEN](/human-donors/IGVFDO4170HAEN/) has in progress subobject phenotypic feature [73e45a6f-b113-48dc-b388-d74a2ffb2266](/phenotypic-features/73e45a6f-b113-48dc-b388-d74a2ffb2266/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO4170HAEN/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO0966KXTA](/human-donors/IGVFDO0966KXTA/) has in progress subobject phenotypic feature [6a401974-b8df-482a-b734-fab7683a6f39](/phenotypic-features/6a401974-b8df-482a-b734-fab7683a6f39/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0966KXTA/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO0966KXTA](/human-donors/IGVFDO0966KXTA/) has in progress subobject phenotypic feature [a5b8945b-e2c3-49f2-96d9-e9c91bd1fe1c](/phenotypic-features/a5b8945b-e2c3-49f2-96d9-e9c91bd1fe1c/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0966KXTA/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO0966KXTA](/human-donors/IGVFDO0966KXTA/) has in progress subobject phenotypic feature [ae18045e-aea2-45bb-b765-de3f2b965b59](/phenotypic-features/ae18045e-aea2-45bb-b765-de3f2b965b59/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0966KXTA/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO0966KXTA](/human-donors/IGVFDO0966KXTA/) has in progress subobject phenotypic feature [d72f23fa-592d-4693-ab03-1160f89e3d5b](/phenotypic-features/d72f23fa-592d-4693-ab03-1160f89e3d5b/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0966KXTA/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6316TGCK](/human-donors/IGVFDO6316TGCK/) has in progress subobject phenotypic feature [f12ecc3c-67f0-4fce-8b6e-de7acb654b51](/phenotypic-features/f12ecc3c-67f0-4fce-8b6e-de7acb654b51/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6316TGCK/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6316TGCK](/human-donors/IGVFDO6316TGCK/) has in progress subobject phenotypic feature [f6f8a961-ff33-42a3-89a3-44c3f09fe474](/phenotypic-features/f6f8a961-ff33-42a3-89a3-44c3f09fe474/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6316TGCK/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6316TGCK](/human-donors/IGVFDO6316TGCK/) has in progress subobject phenotypic feature [36f110b3-ce3c-4adb-acea-eaf2033ddc62](/phenotypic-features/36f110b3-ce3c-4adb-acea-eaf2033ddc62/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6316TGCK/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6316TGCK](/human-donors/IGVFDO6316TGCK/) has in progress subobject phenotypic feature [ede77913-c99e-4e14-90ec-baf07e24b231](/phenotypic-features/ede77913-c99e-4e14-90ec-baf07e24b231/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6316TGCK/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6316TGCK](/human-donors/IGVFDO6316TGCK/) has in progress subobject phenotypic feature [d3b01418-90c3-49c1-a68a-c78b0c579754](/phenotypic-features/d3b01418-90c3-49c1-a68a-c78b0c579754/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6316TGCK/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6316TGCK](/human-donors/IGVFDO6316TGCK/) has in progress subobject phenotypic feature [b56bf52d-97da-4084-bf29-fe5ddcbca885](/phenotypic-features/b56bf52d-97da-4084-bf29-fe5ddcbca885/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6316TGCK/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5718REZU](/human-donors/IGVFDO5718REZU/) has in progress subobject phenotypic feature [b93fee50-2e7c-4280-9708-3c14650d346f](/phenotypic-features/b93fee50-2e7c-4280-9708-3c14650d346f/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5718REZU/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5718REZU](/human-donors/IGVFDO5718REZU/) has in progress subobject phenotypic feature [0d8d534e-543f-42ff-9e5a-b3ef73cb374e](/phenotypic-features/0d8d534e-543f-42ff-9e5a-b3ef73cb374e/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5718REZU/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5718REZU](/human-donors/IGVFDO5718REZU/) has in progress subobject phenotypic feature [7809d834-676b-4003-8074-ec22a40aa6a8](/phenotypic-features/7809d834-676b-4003-8074-ec22a40aa6a8/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5718REZU/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5718REZU](/human-donors/IGVFDO5718REZU/) has in progress subobject phenotypic feature [a4fdeb6a-be72-4729-b209-3c4d729d2080](/phenotypic-features/a4fdeb6a-be72-4729-b209-3c4d729d2080/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5718REZU/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5205IAEO](/human-donors/IGVFDO5205IAEO/) has in progress subobject phenotypic feature [633cb08c-78bd-4268-b5d8-b893a02d26f8](/phenotypic-features/633cb08c-78bd-4268-b5d8-b893a02d26f8/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5205IAEO/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5205IAEO](/human-donors/IGVFDO5205IAEO/) has in progress subobject phenotypic feature [3a8f2048-d423-49dc-872f-a2d52489895c](/phenotypic-features/3a8f2048-d423-49dc-872f-a2d52489895c/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5205IAEO/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5205IAEO](/human-donors/IGVFDO5205IAEO/) has in progress subobject phenotypic feature [5d86271f-e200-458e-b626-d45775c1f778](/phenotypic-features/5d86271f-e200-458e-b626-d45775c1f778/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5205IAEO/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5205IAEO](/human-donors/IGVFDO5205IAEO/) has in progress subobject phenotypic feature [f57b6265-94b7-4979-be4c-73ef23b5faba](/phenotypic-features/f57b6265-94b7-4979-be4c-73ef23b5faba/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5205IAEO/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5205IAEO](/human-donors/IGVFDO5205IAEO/) has in progress subobject phenotypic feature [87d488ba-ef89-494c-8024-bee2b8535732](/phenotypic-features/87d488ba-ef89-494c-8024-bee2b8535732/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5205IAEO/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5205IAEO](/human-donors/IGVFDO5205IAEO/) has in progress subobject phenotypic feature [0165d0f4-b610-4164-9bc3-08dc74af02b3](/phenotypic-features/0165d0f4-b610-4164-9bc3-08dc74af02b3/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5205IAEO/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5410JIJT](/human-donors/IGVFDO5410JIJT/) has in progress subobject phenotypic feature [1baae586-6df7-4bd4-b45d-715e7c843036](/phenotypic-features/1baae586-6df7-4bd4-b45d-715e7c843036/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5410JIJT/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5410JIJT](/human-donors/IGVFDO5410JIJT/) has in progress subobject phenotypic feature [3101c455-2038-49a5-9ba3-d6d44b02e1af](/phenotypic-features/3101c455-2038-49a5-9ba3-d6d44b02e1af/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5410JIJT/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5410JIJT](/human-donors/IGVFDO5410JIJT/) has in progress subobject phenotypic feature [f302fb2e-c140-4148-a63f-4995c94219cd](/phenotypic-features/f302fb2e-c140-4148-a63f-4995c94219cd/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5410JIJT/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5410JIJT](/human-donors/IGVFDO5410JIJT/) has in progress subobject phenotypic feature [8571b362-6133-4f95-8a7d-3f8eadd9f3e7](/phenotypic-features/8571b362-6133-4f95-8a7d-3f8eadd9f3e7/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5410JIJT/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5410JIJT](/human-donors/IGVFDO5410JIJT/) has in progress subobject phenotypic feature [a641a480-5815-4668-9082-c3eea81343dd](/phenotypic-features/a641a480-5815-4668-9082-c3eea81343dd/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5410JIJT/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5410JIJT](/human-donors/IGVFDO5410JIJT/) has in progress subobject phenotypic feature [0bb4a2a6-714d-4f1b-b1ca-f553eaddf065](/phenotypic-features/0bb4a2a6-714d-4f1b-b1ca-f553eaddf065/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5410JIJT/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO1278CNID](/human-donors/IGVFDO1278CNID/) has in progress subobject phenotypic feature [0ffc3098-10e0-4829-bbfd-b484f751c849](/phenotypic-features/0ffc3098-10e0-4829-bbfd-b484f751c849/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO1278CNID/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO1278CNID](/human-donors/IGVFDO1278CNID/) has in progress subobject phenotypic feature [e40b23ca-8049-458d-9daa-2d9a7bfe205d](/phenotypic-features/e40b23ca-8049-458d-9daa-2d9a7bfe205d/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO1278CNID/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO1278CNID](/human-donors/IGVFDO1278CNID/) has in progress subobject phenotypic feature [bf9c75cf-8f7f-44ab-ab3e-d796bc759162](/phenotypic-features/bf9c75cf-8f7f-44ab-ab3e-d796bc759162/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO1278CNID/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO4108VCBA](/human-donors/IGVFDO4108VCBA/) has in progress subobject phenotypic feature [f32d310f-3150-421e-9656-a5fbaf04eebd](/phenotypic-features/f32d310f-3150-421e-9656-a5fbaf04eebd/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO4108VCBA/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO4108VCBA](/human-donors/IGVFDO4108VCBA/) has in progress subobject phenotypic feature [7a3d9384-554b-480b-b1f3-41a99dd54465](/phenotypic-features/7a3d9384-554b-480b-b1f3-41a99dd54465/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO4108VCBA/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO4108VCBA](/human-donors/IGVFDO4108VCBA/) has in progress subobject phenotypic feature [aff60c46-5191-4203-ac06-8623d7e676fa](/phenotypic-features/aff60c46-5191-4203-ac06-8623d7e676fa/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO4108VCBA/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO4108VCBA](/human-donors/IGVFDO4108VCBA/) has in progress subobject phenotypic feature [956b5474-2acd-4c13-bbc1-dd81dba0622a](/phenotypic-features/956b5474-2acd-4c13-bbc1-dd81dba0622a/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO4108VCBA/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO4108VCBA](/human-donors/IGVFDO4108VCBA/) has in progress subobject phenotypic feature [1bb96444-071d-4a8d-81ef-b6567ef83275](/phenotypic-features/1bb96444-071d-4a8d-81ef-b6567ef83275/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO4108VCBA/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO4108VCBA](/human-donors/IGVFDO4108VCBA/) has in progress subobject phenotypic feature [d2909f2d-5e28-4e1f-859d-c562f1c883af](/phenotypic-features/d2909f2d-5e28-4e1f-859d-c562f1c883af/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO4108VCBA/"
}
],
"NOT_COMPLIANT": [
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS5614USRJ](/measurement-sets/IGVFDS5614USRJ/) has sequence file(s): [IGVFFI4651AZME](/sequence-files/IGVFFI4651AZME/), [IGVFFI7197COBJ](/sequence-files/IGVFFI7197COBJ/), [IGVFFI4651BRMF](/sequence-files/IGVFFI4651BRMF/), [IGVFFI2834GXZK](/sequence-files/IGVFFI2834GXZK/), [IGVFFI3707HQPC](/sequence-files/IGVFFI3707HQPC/), [IGVFFI4322QWPS](/sequence-files/IGVFFI4322QWPS/), [IGVFFI8167IPBY](/sequence-files/IGVFFI8167IPBY/), [IGVFFI5225YEUO](/sequence-files/IGVFFI5225YEUO/) which do not have any `seqspecs`. Sequence files in a file set associated with single cell data are expected to link to a sequence specification file.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS5614USRJ/"
},
{
"category": "missing strand specificity",
"detail": "Measurement set [IGVFDS5614USRJ](/measurement-sets/IGVFDS5614USRJ/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_strand_specificity",
"path": "/measurement-sets/IGVFDS5614USRJ/"
}
],
"WARNING": [
{
"category": "missing analysis",
"detail": "Measurement set [IGVFDS5614USRJ](/measurement-sets/IGVFDS5614USRJ/) is a raw data set with files, but is not listed in any `input_file_sets` for any analysis sets. Raw data sets with files are expected to be associated with at least one analysis set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_input_for",
"path": "/measurement-sets/IGVFDS5614USRJ/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping",
"contact_pi": {
"@id": "/users/eae4c275-1e07-45e4-ae67-3e437a8680bb/",
"title": "Ansuman Satpathy"
},
"title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
},
"control_for": [],
"controlled_access": false,
"creation_timestamp": "2025-03-19T21:45:56.351454+00:00",
"data_use_limitation_summaries": [
"No limitations"
],
"donors": [
{
"@id": "/human-donors/IGVFDO1278CNID/",
"accession": "IGVFDO1278CNID",
"aliases": [
"igvf:corces_donor_BANN1506"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4108VCBA/",
"accession": "IGVFDO4108VCBA",
"aliases": [
"igvf:corces_donor_BANN0325"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0966KXTA/",
"accession": "IGVFDO0966KXTA",
"aliases": [
"igvf:corces_donor_BANN0138"
],
"sex": "female",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5718REZU/",
"accession": "IGVFDO5718REZU",
"aliases": [
"igvf:corces_donor_BANN9926"
],
"sex": "female",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4170HAEN/",
"accession": "IGVFDO4170HAEN",
"aliases": [
"igvf:corces_donor_BANN1864"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5205IAEO/",
"accession": "IGVFDO5205IAEO",
"aliases": [
"igvf:corces_donor_BANN1632"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6316TGCK/",
"accession": "IGVFDO6316TGCK",
"aliases": [
"igvf:corces_donor_BANN1814"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5410JIJT/",
"accession": "IGVFDO5410JIJT",
"aliases": [
"igvf:corces_donor_BANN0919"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI4651AZME/",
"accession": "IGVFFI4651AZME",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP030_G1_P078_L007_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T00:28:11.915567+00:00",
"file_format": "fastq",
"file_size": 1194697960,
"href": "/sequence-files/IGVFFI4651AZME/@@download/IGVFFI4651AZME.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/a8d6282c-c342-4de4-8841-88f74c1f8dce/IGVFFI4651AZME.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP030_G1_L001_P078_S73_L007_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7197COBJ/",
"accession": "IGVFFI7197COBJ",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP030_G1_P078_L007_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T00:28:15.358571+00:00",
"file_format": "fastq",
"file_size": 1022399902,
"href": "/sequence-files/IGVFFI7197COBJ/@@download/IGVFFI7197COBJ.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/8cada8ad-6cb9-4f50-af85-8d94ad0bbcb9/IGVFFI7197COBJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP030_G1_L001_P078_S73_L007_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4651BRMF/",
"accession": "IGVFFI4651BRMF",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP030_G1_P078_L008_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T00:28:27.576726+00:00",
"file_format": "fastq",
"file_size": 1199036543,
"href": "/sequence-files/IGVFFI4651BRMF/@@download/IGVFFI4651BRMF.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/6dec110f-728a-4895-ba86-3c802b8bec01/IGVFFI4651BRMF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP030_G1_L001_P078_S73_L008_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2834GXZK/",
"accession": "IGVFFI2834GXZK",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP030_G1_P078_L008_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T00:28:39.970054+00:00",
"file_format": "fastq",
"file_size": 10674465724,
"href": "/sequence-files/IGVFFI2834GXZK/@@download/IGVFFI2834GXZK.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/34b0111c-32d7-4ff5-a909-fbaac1b9a768/IGVFFI2834GXZK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP030_G1_L001_P078_S73_L008_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3707HQPC/",
"accession": "IGVFFI3707HQPC",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP030_G1_P078_L007_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T00:28:24.033452+00:00",
"file_format": "fastq",
"file_size": 10736052049,
"href": "/sequence-files/IGVFFI3707HQPC/@@download/IGVFFI3707HQPC.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/125ae082-d602-4f47-9703-e73970d999e8/IGVFFI3707HQPC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP030_G1_L001_P078_S73_L007_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4322QWPS/",
"accession": "IGVFFI4322QWPS",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP030_G1_P078_L008_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T00:28:36.094958+00:00",
"file_format": "fastq",
"file_size": 14016570638,
"href": "/sequence-files/IGVFFI4322QWPS/@@download/IGVFFI4322QWPS.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/df0f68fb-7371-4b80-bb6f-2b1601c798d2/IGVFFI4322QWPS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP030_G1_L001_P078_S73_L008_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8167IPBY/",
"accession": "IGVFFI8167IPBY",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP030_G1_P078_L007_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T00:28:19.327808+00:00",
"file_format": "fastq",
"file_size": 14341269616,
"href": "/sequence-files/IGVFFI8167IPBY/@@download/IGVFFI8167IPBY.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/f8168571-76fa-4737-a1ac-fc94206ede95/IGVFFI8167IPBY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP030_G1_L001_P078_S73_L007_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5225YEUO/",
"accession": "IGVFFI5225YEUO",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP030_G1_P078_L008_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T00:28:32.724227+00:00",
"file_format": "fastq",
"file_size": 1018838427,
"href": "/sequence-files/IGVFFI5225YEUO/@@download/IGVFFI5225YEUO.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/469775c1-82a1-45ef-bf44-842d8f13711a/IGVFFI5225YEUO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP030_G1_L001_P078_S73_L008_I2_001.fastq.gz",
"upload_status": "validated"
}
],
"input_for": [],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"multiome_size": 2,
"onlist_files": [
"/tabular-files/IGVFFI8751YQRY/"
],
"onlist_method": "no combination",
"preferred_assay_title": "10x multiome",
"protocols": [
"https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn"
],
"related_multiome_datasets": [
{
"@id": "/measurement-sets/IGVFDS4582EMVY/",
"accession": "IGVFDS4582EMVY",
"status": "preview"
}
],
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM1787GSWB/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM1787GSWB",
"aliases": [
"igvf:corces_multiplexedSample_RP030_G1"
],
"classifications": [
"tissue",
"multiplexed sample"
],
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001874/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "preview",
"summary": "putamen",
"term_name": "putamen"
},
{
"@id": "/sample-terms/UBERON_0002038/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "preview",
"summary": "substantia nigra",
"term_name": "substantia nigra"
},
{
"@id": "/sample-terms/UBERON_0002740/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "preview",
"summary": "posterior cingulate gyrus",
"term_name": "posterior cingulate gyrus"
},
{
"@id": "/sample-terms/UBERON_0002771/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "preview",
"summary": "middle temporal gyrus",
"term_name": "middle temporal gyrus"
}
],
"status": "preview",
"summary": "multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 6 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
"schema_version": "26",
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"submitted_files_timestamp": "2025-03-21T00:28:11.915567+00:00",
"summary": "single-nucleus RNA sequencing assay (10x multiome)",
"uuid": "abd6afc8-c2a3-44fd-95ee-d8e36a65f43f"
}