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INDEXED
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MeasurementSet
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IGVFDS5607LMEW
IGVFDS5607LMEW
released
GRU
Json view
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 207)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
buenrostro-bernstein:scATAC Lib 596
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
36 items
1
2
3
4
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0027VQHK
fastq
reads
I1
4347
Barcode index
IGVFFI8172NTED
Illumina NovaSeq 6000
H75F7DSX5
1.2 GB
Jason Buenrostro, Broad
validated
IGVFFI0304KJSR
fastq
reads
I1
8706
Barcode index
IGVFFI4133OSAM
Illumina NovaSeq X
22LMVNLT4
745 MB
Jason Buenrostro, Broad
validated
IGVFFI0460EXUV
fastq
reads
R1
9090
Read 1
IGVFFI6510EMPJ
Illumina NovaSeq X
22LMVNLT4
1.2 GB
Jason Buenrostro, Broad
validated
IGVFFI0950QILY
fastq
reads
R1
9186
Read 1
IGVFFI2240ZFBS
Illumina NovaSeq X
22LMVNLT4
1.2 GB
Jason Buenrostro, Broad
validated
IGVFFI1042JCJG
fastq
reads
R2
4383
Read 2
IGVFFI5892CRNB
Illumina NovaSeq 6000
H75F7DSX5
1.5 GB
Jason Buenrostro, Broad
validated
IGVFFI1130VYGL
fastq
reads
I1
8802
Barcode index
IGVFFI8759BAQZ
Illumina NovaSeq X
22LMVNLT4
733 MB
Jason Buenrostro, Broad
validated
IGVFFI1480KUUA
fastq
reads
R1
8802
Read 1
IGVFFI8759BAQZ
Illumina NovaSeq X
22LMVNLT4
1.2 GB
Jason Buenrostro, Broad
validated
IGVFFI1539PTWE
fastq
reads
R2
9090
Read 2
IGVFFI6510EMPJ
Illumina NovaSeq X
22LMVNLT4
1.2 GB
Jason Buenrostro, Broad
validated
IGVFFI2296AROA
fastq
reads
R1
8898
Read 1
IGVFFI3650XPRY
Illumina NovaSeq X
22LMVNLT4
1.3 GB
Jason Buenrostro, Broad
validated
IGVFFI2373INDV
fastq
reads
R2
8802
Read 2
IGVFFI8759BAQZ
Illumina NovaSeq X
22LMVNLT4
1.2 GB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM9310VRCN
InVitroSystem
induced pluripotent stem cell
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 207)
Donors
99 items
1
2
3
4
5
10
Accession
Aliases
Sex
Taxa
IGVFDO0123YZDN
buenrostro-bernstein:Donor 1943
unspecified
Homo sapiens
IGVFDO0211CZWE
buenrostro-bernstein:Donor 1909
unspecified
Homo sapiens
IGVFDO0279GJBF
buenrostro-bernstein:Donor 1937
unspecified
Homo sapiens
IGVFDO0417TJMX
buenrostro-bernstein:Donor 1907
unspecified
Homo sapiens
IGVFDO0436YOXD
buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
IGVFDO0508COBR
buenrostro-bernstein:Donor 1963
unspecified
Homo sapiens
IGVFDO0948FTCE
buenrostro-bernstein:Donor 1952
unspecified
Homo sapiens
IGVFDO0980QZSD
buenrostro-bernstein:Donor 1946
unspecified
Homo sapiens
IGVFDO1064GZAS
buenrostro-bernstein:Donor 1982
unspecified
Homo sapiens
IGVFDO1255IJEH
buenrostro-bernstein:Donor 1975
unspecified
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS0778IBNX
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 239
Jason Buenrostro, Broad