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IGVFDS5600JMON

released
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples
Protocols
Aliases
ansuman-satpathy:snATAC-seq_igvf17_10x5

Sequencing Results (Illumina)

16 items
Read Names
fastq
reads
I1
1
22NF33LT3
6
1.6 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
22NF33LT3
7
1.6 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
22NF33LT3
5
1.6 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R3
1
Read 2
22NF33LT3
8
6.2 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R3
1
Read 2
22NF33LT3
5
6.6 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
22NF33LT3
8
1.6 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R3
1
Read 2
22NF33LT3
7
6.3 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
Read 1
22NF33LT3
7
6.3 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
Barcode index
22NF33LT3
8
3.5 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
Barcode index
22NF33LT3
5
3.7 GB
Ansuman Satpathy, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_RUES2
  • igvf:donor_RUES2
female
Homo sapiens

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
  • ansuman-satpathy:igvf17_analysis_set
Ansuman Satpathy, Stanford

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
  • ansuman-satpathy:snRNA-seq_igvf17_10x5
Ansuman Satpathy, Stanford

Auxiliary Datasets

1 item
Accession
Type
Summary
Files
Aliases
Lab
AuxiliarySet
lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
  • ansuman-satpathy:multiseq_igvf17_10x5
Ansuman Satpathy, Stanford

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford