IGVFDS5589QOQD

1{
2    "@context": "/terms/",
3    "@id": "/measurement-sets/IGVFDS5589QOQD/",
4    "@type": [
5        "MeasurementSet",
6        "FileSet",
7        "Item"
8    ],
9    "accession": "IGVFDS5589QOQD",
10    "aliases": [
11        "ali-mortazavi:010_67H_illumina"
12    ],
13    "assay_term": {
14        "@id": "/assay-terms/OBI_0003109/",
15        "assay_slims": [
16            "gene expression"
17        ],
18        "status": "released",
19        "term_name": "single-nucleus RNA sequencing assay"
20    },
21    "audit": {
22        "INTERNAL_ACTION": [
23            {
24                "category": "mismatched status",
25                "detail": "Released multiplexed sample [IGVFSM9228OJSD](/multiplexed-samples/IGVFSM9228OJSD/) has in progress subobject tabular file [IGVFFI7184PGQJ](/tabular-files/IGVFFI7184PGQJ/).",
26                "level": 30,
27                "level_name": "INTERNAL_ACTION",
28                "name": "audit_item_status",
29                "path": "/multiplexed-samples/IGVFSM9228OJSD/"
30            },
31            {
32                "category": "missing publication",
33                "detail": "Multiplexed sample [IGVFSM9228OJSD](/multiplexed-samples/IGVFSM9228OJSD/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
34                "level": 30,
35                "level_name": "INTERNAL_ACTION",
36                "name": "audit_sample_missing_publication",
37                "path": "/multiplexed-samples/IGVFSM9228OJSD/"
38            },
39            {
40                "category": "missing publication",
41                "detail": "Measurement set [IGVFDS5589QOQD](/measurement-sets/IGVFDS5589QOQD/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
42                "level": 30,
43                "level_name": "INTERNAL_ACTION",
44                "name": "audit_file_set_missing_publication",
45                "path": "/measurement-sets/IGVFDS5589QOQD/"
46            },
47            {
48                "category": "mismatched status",
49                "detail": "Released measurement set [IGVFDS5589QOQD](/measurement-sets/IGVFDS5589QOQD/) has in progress subobject tabular file [IGVFFI2591OFQO](/tabular-files/IGVFFI2591OFQO/).",
50                "level": 30,
51                "level_name": "INTERNAL_ACTION",
52                "name": "audit_item_status",
53                "path": "/measurement-sets/IGVFDS5589QOQD/"
54            },
55            {
56                "category": "mismatched status",
57                "detail": "Released measurement set [IGVFDS5589QOQD](/measurement-sets/IGVFDS5589QOQD/) has in progress subobject tabular file [IGVFFI1138MCVX](/tabular-files/IGVFFI1138MCVX/).",
58                "level": 30,
59                "level_name": "INTERNAL_ACTION",
60                "name": "audit_item_status",
61                "path": "/measurement-sets/IGVFDS5589QOQD/"
62            }
63        ]
64    },
65    "award": {
66        "@id": "/awards/HG012077/",
67        "component": "mapping",
68        "contact_pi": {
69            "@id": "/users/2c33e192-e815-4384-a220-72a0992cbe24/",
70            "title": "Ali Mortazavi"
71        },
72        "title": "Center for Mouse Genomic Variation at Single Cell Resolution"
73    },
74    "control_for": [],
75    "creation_timestamp": "2023-10-13T17:19:56.528685+00:00",
76    "data_use_limitation_summaries": [
77        "no certificate"
78    ],
79    "donors": [
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83            "aliases": [
84                "ali-mortazavi:040_129S1J_10F"
85            ],
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89            "taxa": "Mus musculus"
90        },
91        {
92            "@id": "/rodent-donors/IGVFDO2645GUSC/",
93            "accession": "IGVFDO2645GUSC",
94            "aliases": [
95                "ali-mortazavi:060_WSBJ_10F"
96            ],
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98            "status": "released",
99            "strain_background": "WSB/EiJ (WSB)",
100            "taxa": "Mus musculus"
101        },
102        {
103            "@id": "/rodent-donors/IGVFDO0026YRCR/",
104            "accession": "IGVFDO0026YRCR",
105            "aliases": [
106                "ali-mortazavi:018_B6J_10F"
107            ],
108            "sex": "female",
109            "status": "released",
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111            "taxa": "Mus musculus"
112        },
113        {
114            "@id": "/rodent-donors/IGVFDO0430HQIU/",
115            "accession": "IGVFDO0430HQIU",
116            "aliases": [
117                "ali-mortazavi:041_129S1J_10M"
118            ],
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122            "taxa": "Mus musculus"
123        },
124        {
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126            "accession": "IGVFDO6066JIEJ",
127            "aliases": [
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129            ],
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134        },
135        {
136            "@id": "/rodent-donors/IGVFDO3603MEIO/",
137            "accession": "IGVFDO3603MEIO",
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139                "ali-mortazavi:084_PWKJ_10F"
140            ],
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145        },
146        {
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148            "accession": "IGVFDO5177QEWF",
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150                "ali-mortazavi:063_WSBJ_10M"
151            ],
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153            "status": "released",
154            "strain_background": "WSB/EiJ (WSB)",
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156        },
157        {
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159            "accession": "IGVFDO2301HIUQ",
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161                "ali-mortazavi:067_NODJ_10M"
162            ],
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165            "strain_background": "NOD/ShiLtJ (NOD)",
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167        },
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172                "ali-mortazavi:025_B6J_10M"
173            ],
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178        },
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183                "ali-mortazavi:048_NZOJ_10F"
184            ],
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189        },
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195            ],
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200        },
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211        },
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217            ],
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221            "taxa": "Mus musculus"
222        },
223        {
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228            ],
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231            "strain_background": "WSB/EiJ (WSB)",
232            "taxa": "Mus musculus"
233        },
234        {
235            "@id": "/rodent-donors/IGVFDO3762EAWT/",
236            "accession": "IGVFDO3762EAWT",
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238                "ali-mortazavi:076_PWKJ_10F"
239            ],
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241            "status": "released",
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243            "taxa": "Mus musculus"
244        },
245        {
246            "@id": "/rodent-donors/IGVFDO7254QNQZ/",
247            "accession": "IGVFDO7254QNQZ",
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249                "ali-mortazavi:031_AJ_10M"
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255        },
256        {
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266        },
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272            ],
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279            "@id": "/rodent-donors/IGVFDO0751WQHI/",
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287            "taxa": "Mus musculus"
288        },
289        {
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291            "accession": "IGVFDO4725SNCJ",
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293                "ali-mortazavi:017_B6J_10M"
294            ],
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296            "status": "released",
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299        },
300        {
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302            "accession": "IGVFDO9202WGJZ",
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307            "status": "released",
308            "strain_background": "PWK/PhJ (PWK)",
309            "taxa": "Mus musculus"
310        },
311        {
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313            "accession": "IGVFDO7062NBTQ",
314            "aliases": [
315                "ali-mortazavi:079_PWKJ_10M"
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318            "status": "released",
319            "strain_background": "PWK/PhJ (PWK)",
320            "taxa": "Mus musculus"
321        },
322        {
323            "@id": "/rodent-donors/IGVFDO4707SGWM/",
324            "accession": "IGVFDO4707SGWM",
325            "aliases": [
326                "ali-mortazavi:051_NZOJ_10M"
327            ],
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329            "status": "released",
330            "strain_background": "NZO/H1LtJ (NZO)",
331            "taxa": "Mus musculus"
332        },
333        {
334            "@id": "/rodent-donors/IGVFDO8276XXVT/",
335            "accession": "IGVFDO8276XXVT",
336            "aliases": [
337                "ali-mortazavi:074_NODJ_10F"
338            ],
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340            "status": "released",
341            "strain_background": "NOD/ShiLtJ (NOD)",
342            "taxa": "Mus musculus"
343        },
344        {
345            "@id": "/rodent-donors/IGVFDO9560CEGZ/",
346            "accession": "IGVFDO9560CEGZ",
347            "aliases": [
348                "ali-mortazavi:061_WSBJ_10M"
349            ],
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351            "status": "released",
352            "strain_background": "WSB/EiJ (WSB)",
353            "taxa": "Mus musculus"
354        },
355        {
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359                "ali-mortazavi:088_CASTJ_10F"
360            ],
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362            "status": "released",
363            "strain_background": "CAST/EiJ (CAST)",
364            "taxa": "Mus musculus"
365        },
366        {
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368            "accession": "IGVFDO2319OUEC",
369            "aliases": [
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371            ],
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375            "taxa": "Mus musculus"
376        },
377        {
378            "@id": "/rodent-donors/IGVFDO4546RHSG/",
379            "accession": "IGVFDO4546RHSG",
380            "aliases": [
381                "ali-mortazavi:027_AJ_10M"
382            ],
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384            "status": "released",
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386            "taxa": "Mus musculus"
387        },
388        {
389            "@id": "/rodent-donors/IGVFDO7957DMLJ/",
390            "accession": "IGVFDO7957DMLJ",
391            "aliases": [
392                "ali-mortazavi:033_AJ_10M"
393            ],
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398        },
399        {
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406            "status": "released",
407            "strain_background": "CAST/EiJ (CAST)",
408            "taxa": "Mus musculus"
409        },
410        {
411            "@id": "/rodent-donors/IGVFDO7951JDSP/",
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413            "aliases": [
414                "ali-mortazavi:026_AJ_10F"
415            ],
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417            "status": "released",
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419            "taxa": "Mus musculus"
420        },
421        {
422            "@id": "/rodent-donors/IGVFDO1744FDIX/",
423            "accession": "IGVFDO1744FDIX",
424            "aliases": [
425                "ali-mortazavi:036_129S1J_10F"
426            ],
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428            "status": "released",
429            "strain_background": "129S1/SvImJ (129)",
430            "taxa": "Mus musculus"
431        },
432        {
433            "@id": "/rodent-donors/IGVFDO5502NJPS/",
434            "accession": "IGVFDO5502NJPS",
435            "aliases": [
436                "ali-mortazavi:038_129S1J_10F"
437            ],
438            "sex": "female",
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440            "strain_background": "129S1/SvImJ (129)",
441            "taxa": "Mus musculus"
442        },
443        {
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446            "aliases": [
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448            ],
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451            "strain_background": "NOD/ShiLtJ (NOD)",
452            "taxa": "Mus musculus"
453        },
454        {
455            "@id": "/rodent-donors/IGVFDO2517TXOT/",
456            "accession": "IGVFDO2517TXOT",
457            "aliases": [
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460            "sex": "female",
461            "status": "released",
462            "strain_background": "CAST/EiJ (CAST)",
463            "taxa": "Mus musculus"
464        },
465        {
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467            "accession": "IGVFDO3640WUBU",
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472            "status": "released",
473            "strain_background": "NOD/ShiLtJ (NOD)",
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475        },
476        {
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478            "accession": "IGVFDO6124WGNO",
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481            ],
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486        },
487        {
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489            "accession": "IGVFDO2831PZHE",
490            "aliases": [
491                "ali-mortazavi:077_PWKJ_10M"
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494            "status": "released",
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496            "taxa": "Mus musculus"
497        },
498        {
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500            "accession": "IGVFDO5737FRWD",
501            "aliases": [
502                "ali-mortazavi:081_PWKJ_10M"
503            ],
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505            "status": "released",
506            "strain_background": "PWK/PhJ (PWK)",
507            "taxa": "Mus musculus"
508        },
509        {
510            "@id": "/rodent-donors/IGVFDO6219LVKW/",
511            "accession": "IGVFDO6219LVKW",
512            "aliases": [
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514            ],
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516            "status": "released",
517            "strain_background": "A/J (AJ)",
518            "taxa": "Mus musculus"
519        },
520        {
521            "@id": "/rodent-donors/IGVFDO8904OIIT/",
522            "accession": "IGVFDO8904OIIT",
523            "aliases": [
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527            "status": "released",
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529            "taxa": "Mus musculus"
530        },
531        {
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533            "accession": "IGVFDO9510ILZG",
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536            ],
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538            "status": "released",
539            "strain_background": "NZO/H1LtJ (NZO)",
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541        },
542        {
543            "@id": "/rodent-donors/IGVFDO0624KKTV/",
544            "accession": "IGVFDO0624KKTV",
545            "aliases": [
546                "ali-mortazavi:030_AJ_10F"
547            ],
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551            "taxa": "Mus musculus"
552        },
553        {
554            "@id": "/rodent-donors/IGVFDO1452VDIT/",
555            "accession": "IGVFDO1452VDIT",
556            "aliases": [
557                "ali-mortazavi:035_AJ_10M"
558            ],
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560            "status": "released",
561            "strain_background": "A/J (AJ)",
562            "taxa": "Mus musculus"
563        },
564        {
565            "@id": "/rodent-donors/IGVFDO0696DMIA/",
566            "accession": "IGVFDO0696DMIA",
567            "aliases": [
568                "ali-mortazavi:057_WSBJ_10M"
569            ],
570            "sex": "male",
571            "status": "released",
572            "strain_background": "WSB/EiJ (WSB)",
573            "taxa": "Mus musculus"
574        },
575        {
576            "@id": "/rodent-donors/IGVFDO3436ZMLY/",
577            "accession": "IGVFDO3436ZMLY",
578            "aliases": [
579                "ali-mortazavi:091_CASTJ_10M"
580            ],
581            "sex": "male",
582            "status": "released",
583            "strain_background": "CAST/EiJ (CAST)",
584            "taxa": "Mus musculus"
585        },
586        {
587            "@id": "/rodent-donors/IGVFDO9374WXKK/",
588            "accession": "IGVFDO9374WXKK",
589            "aliases": [
590                "ali-mortazavi:028_AJ_10F"
591            ],
592            "sex": "female",
593            "status": "released",
594            "strain_background": "A/J (AJ)",
595            "taxa": "Mus musculus"
596        },
597        {
598            "@id": "/rodent-donors/IGVFDO2106EEWB/",
599            "accession": "IGVFDO2106EEWB",
600            "aliases": [
601                "ali-mortazavi:078_PWKJ_10F"
602            ],
603            "sex": "female",
604            "status": "released",
605            "strain_background": "PWK/PhJ (PWK)",
606            "taxa": "Mus musculus"
607        },
608        {
609            "@id": "/rodent-donors/IGVFDO9340WGNV/",
610            "accession": "IGVFDO9340WGNV",
611            "aliases": [
612                "ali-mortazavi:037_129S1J_10M"
613            ],
614            "sex": "male",
615            "status": "released",
616            "strain_background": "129S1/SvImJ (129)",
617            "taxa": "Mus musculus"
618        },
619        {
620            "@id": "/rodent-donors/IGVFDO7007WBAX/",
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1278    ],
1279    "input_for": [
1280        "/analysis-sets/IGVFDS7560ARVB/"
1281    ],
1282    "lab": {
1283        "@id": "/labs/ali-mortazavi/",
1284        "title": "Ali Mortazavi, UCI"
1285    },
1286    "notes": "Preferred_assay_titles enum Parse Split-seq has been renamed to be Parse SPLiT-seq.",
1287    "onlist_files": [
1288        "/tabular-files/IGVFFI2591OFQO/",
1289        "/tabular-files/IGVFFI1138MCVX/"
1290    ],
1291    "onlist_method": "multi",
1292    "preferred_assay_title": "Parse SPLiT-seq",
1293    "protocols": [
1294        "https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-n2bvj3noplk5/v2",
1295        "https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-14egn334ml5d/v2",
1296        "https://www.protocols.io/view/evercode-wt-mega-v2-2-1-8epv5xxrng1b/v1",
1297        "https://www.protocols.io/view/evercode-single-index-pcr-5jyl82k9rl2w/v1"
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1323                    "@type": [
1324                        "SampleTerm",
1325                        "OntologyTerm",
1326                        "Item"
1327                    ],
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1334                    "@type": [
1335                        "SampleTerm",
1336                        "OntologyTerm",
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1346            "taxa": "Mus musculus",
1347            "treatments": []
1348        }
1349    ],
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1358        "title": "Diane Trout"
1359    },
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1361    "summary": "Parse SPLiT-seq",
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1363}