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IGVFDS5576TGNS

released
File Set Type
experimental data
Summary
ATAC-seq
Assay Term
bulk assay for transposase-accessible chromatin using sequencing
Sample Summaries
  • Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days treated with 4 μM GSK3 inhibition for 7 days
Protocols
Aliases
charles-gersbach:measurement-set-bulk-atac-chir4um-ipsc-cm-rep1
Attribution
Charles Gersbach, Duke

Sequencing Results (Illumina)

2 items
Read Names
fastq
reads
R2
2
2.4 GB
Charles Gersbach, Duke
validated
fastq
reads
R1
2
2.9 GB
Charles Gersbach, Duke
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days treated with 4 μM GSK3 inhibition for 7 days

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_WTC11
male
Homo sapiens

Control File Sets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
untreated ATAC-seq
  • charles-gersbach:measurement-set-bulk-atac-control-ipsc-cm-rep1
Charles Gersbach, Duke

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
ATAC-seq: alignments, fold change over control, peak quantifications
  • charles-gersbach:analysis-set-bulk-atac-DEanalysis
Charles Gersbach, Duke