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INDEXED
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MeasurementSet
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IGVFDS5543NUGL
IGVFDS5543NUGL
released
GRU
Json view
File Set Type
experimental data
Summary
single-cell RNA sequencing assay (SHARE-seq)
Assay Term
single-cell RNA sequencing assay
Sample Summaries
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 205)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
buenrostro-bernstein:scRNA Lib 453
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
6 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0741HPSU
fastq
reads
R1
914
Read 1
IGVFFI5729URDL
Illumina NovaSeq X
22773CLT3
1.1 GB
Jason Buenrostro, Broad
validated
IGVFFI0763FJET
fastq
reads
R2
914
Read 2
IGVFFI5729URDL
Illumina NovaSeq X
22773CLT3
542 MB
Jason Buenrostro, Broad
validated
IGVFFI1331SLJU
fastq
reads
I1
872
Barcode index
IGVFFI8188WXEF
Illumina NovaSeq X
22773CLT3
439 MB
Jason Buenrostro, Broad
validated
IGVFFI3458MXFY
fastq
reads
R2
872
Read 2
IGVFFI8188WXEF
Illumina NovaSeq X
22773CLT3
585 MB
Jason Buenrostro, Broad
validated
IGVFFI4356QFNP
fastq
reads
R1
872
Read 1
IGVFFI8188WXEF
Illumina NovaSeq X
22773CLT3
1.2 GB
Jason Buenrostro, Broad
validated
IGVFFI6091UKDR
fastq
reads
I1
914
Barcode index
IGVFFI5729URDL
Illumina NovaSeq X
22773CLT3
418 MB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM4798GESQ
InVitroSystem
induced pluripotent stem cell
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 205)
Donors
99 items
1
2
3
4
5
10
Accession
Aliases
Sex
Taxa
IGVFDO0123YZDN
buenrostro-bernstein:Donor 1943
unspecified
Homo sapiens
IGVFDO0211CZWE
buenrostro-bernstein:Donor 1909
unspecified
Homo sapiens
IGVFDO0279GJBF
buenrostro-bernstein:Donor 1937
unspecified
Homo sapiens
IGVFDO0417TJMX
buenrostro-bernstein:Donor 1907
unspecified
Homo sapiens
IGVFDO0436YOXD
buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
IGVFDO0508COBR
buenrostro-bernstein:Donor 1963
unspecified
Homo sapiens
IGVFDO0948FTCE
buenrostro-bernstein:Donor 1952
unspecified
Homo sapiens
IGVFDO0980QZSD
buenrostro-bernstein:Donor 1946
unspecified
Homo sapiens
IGVFDO1064GZAS
buenrostro-bernstein:Donor 1982
unspecified
Homo sapiens
IGVFDO1255IJEH
buenrostro-bernstein:Donor 1975
unspecified
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS0709NNUQ
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
buenrostro-bernstein:scATAC Lib 584
Jason Buenrostro, Broad