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IGVFDS5514ZVEH

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File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
  • multiplexed sample: Homo sapiens (male, 39.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 28.0 years) peripheral blood mononuclear cell; ... and 18 more samples
Protocols
Aliases
jimmie-ye:XX1-SC1_snRNA

Sequencing Results (Illumina)

12 items
Read Names
fastq
reads
I2
8
813 MB
Jimmie Ye, UCSF
validated
fastq
reads
I1
7
783 MB
Jimmie Ye, UCSF
validated
fastq
reads
I2
6
857 MB
Jimmie Ye, UCSF
validated
fastq
reads
R2
7
Read 2
4.9 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
6
Read 2
5.0 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
6
Read 1
3.5 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
7
Read 1
3.5 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
8
Read 1
3.2 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
8
Read 2
4.6 GB
Jimmie Ye, UCSF
validated
fastq
reads
I2
7
839 MB
Jimmie Ye, UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male, 39.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 28.0 years) peripheral blood mononuclear cell; ... and 18 more samples

Donors

20 items
Aliases
  • jimmie-ye:donor_35
female
Homo sapiens
  • jimmie-ye:donor_286
male
Homo sapiens
  • jimmie-ye:donor_8
female
Homo sapiens
  • jimmie-ye:donor_4
male
Homo sapiens
  • jimmie-ye:donor_254
female
Homo sapiens
  • jimmie-ye:donor_242
male
Homo sapiens
  • jimmie-ye:donor_12
female
Homo sapiens
  • jimmie-ye:donor_6
female
Homo sapiens
  • jimmie-ye:donor_1
female
Homo sapiens
  • jimmie-ye:donor_283
male
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
  • jimmie-ye:XX1-SC1_snATAC
Jimmie Ye, UCSF

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Jimmie Ye, UCSF