{
"@context": "/terms/",
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"MeasurementSet",
"FileSet",
"Item"
],
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"aliases": [
"bradley-bernstein:scATAC Lib 29",
"buenrostro-bernstein:scATAC Lib 29"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"status": "released",
"term_name": "single-cell ATAC-seq"
},
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{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS5496ZDEU](/measurement-sets/IGVFDS5496ZDEU/) has sequence file(s): [IGVFFI8771EIYQ](/sequence-files/IGVFFI8771EIYQ/), [IGVFFI6729WIIC](/sequence-files/IGVFFI6729WIIC/), [IGVFFI6538ONEF](/sequence-files/IGVFFI6538ONEF/), [IGVFFI1078BKFZ](/sequence-files/IGVFFI1078BKFZ/), [IGVFFI3921HSNU](/sequence-files/IGVFFI3921HSNU/), [IGVFFI0594JHQL](/sequence-files/IGVFFI0594JHQL/), [IGVFFI1625LMBR](/sequence-files/IGVFFI1625LMBR/), [IGVFFI4128KKPY](/sequence-files/IGVFFI4128KKPY/), [IGVFFI9655XHTW](/sequence-files/IGVFFI9655XHTW/), [IGVFFI4419NRPJ](/sequence-files/IGVFFI4419NRPJ/), [IGVFFI7088TPTS](/sequence-files/IGVFFI7088TPTS/), [IGVFFI6837TZYR](/sequence-files/IGVFFI6837TZYR/), [IGVFFI9021DCKG](/sequence-files/IGVFFI9021DCKG/), [IGVFFI6429FSVZ](/sequence-files/IGVFFI6429FSVZ/), [IGVFFI3624VIXZ](/sequence-files/IGVFFI3624VIXZ/), [IGVFFI4581KNES](/sequence-files/IGVFFI4581KNES/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS5496ZDEU/"
},
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM2899FEKF](/primary-cells/IGVFSM2899FEKF/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM2899FEKF/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS5496ZDEU](/measurement-sets/IGVFDS5496ZDEU/) has an `assay_term` of single-cell ATAC-seq but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
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"path": "/measurement-sets/IGVFDS5496ZDEU/"
}
]
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"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
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],
"accession": "IGVFSM2899FEKF",
"aliases": [
"bradley-bernstein:BioSam 4567_SS-PKR 5",
"buenrostro-bernstein:BioSam 4567_SS-PKR 5"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 5), male, Homo sapiens (29 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:41:44.750637+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "7de6f901-163b-44d0-8363-49ba3bfd584d"
}