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MeasurementSet
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IGVFDS5462PWXH
IGVFDS5462PWXH
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
Homo sapiens (male, 81 years) posterior cingulate gyrus tissue
Protocols
https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-snmulti-6uchesw
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_X004_G2_ATAC
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
4 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI2211YBKB
fastq
reads
R2
1
Barcode index
Illumina NovaSeq 6000
H5TH7DSX5
4
3.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5463IJII
fastq
reads
I1
1
Illumina NovaSeq 6000
H5TH7DSX5
4
1.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5511LYXX
fastq
reads
R3
1
Read 2
Illumina NovaSeq 6000
H5TH7DSX5
4
7.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI9588QOWM
fastq
reads
R1
1
Read 1
Illumina NovaSeq 6000
H5TH7DSX5
4
6.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM6036OELU
Tissue
posterior cingulate gyrus
Homo sapiens (male, 81 years) posterior cingulate gyrus tissue
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO4825ZGIS
igvf:corces_donor_BANN2057
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5771YKFQ
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_X004_G2_RNA
Ryan Corces, Gladstone Institute UCSF