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IGVFDS5424OKKO

preview
This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 8 more samples
Protocols
Aliases
igvf:corces_measurementSet_RP025_G7_ATAC
Attribution
Ryan Corces, Gladstone Institute UCSF

Sequencing Results (Illumina)

8 items
Read Names
fastq
reads
R3
1
Read 2
19RTCA4LE
2
15 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
19RTCA4LE
2
15 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Barcode index
19RTCA4LE
2
3.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R3
1
Read 2
19RTCA4LE
3
15 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
19RTCA4LE
2
1.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Barcode index
19RTCA4LE
3
3.8 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
19RTCA4LE
3
16 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
19RTCA4LE
3
1.6 GB
Ryan Corces, Gladstone Institute UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 8 more samples

Donors

10 items
Aliases
  • igvf:corces_donor_BANN0218
male
Homo sapiens
  • igvf:corces_donor_BANN1063
male
Homo sapiens
  • igvf:corces_donor_BANN0129
male
Homo sapiens
  • igvf:corces_donor_BANN2057
male
Homo sapiens
  • igvf:corces_donor_BANN1858
male
Homo sapiens
  • igvf:corces_donor_BANN1814
male
Homo sapiens
  • igvf:corces_donor_BANN0124
male
Homo sapiens
  • igvf:corces_donor_BANN0210
male
Homo sapiens
  • igvf:corces_donor_BANN1234
male
Homo sapiens
  • igvf:corces_donor_BANN9902
female
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_RP025_G7_RNA
Ryan Corces, Gladstone Institute UCSF