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INDEXED
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MeasurementSet
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IGVFDS5416ROJO
IGVFDS5416ROJO
released
Json view
File Set Type
experimental data
Summary
ATAC-seq integrating a control transduction expression vector library
Assay Term
bulk assay for transposase-accessible chromatin using sequencing
Sample Summaries
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
Construct Library Sets
IGVFDS5584SPIV
control transduction expression vector library
Protocols
https://www.protocols.io/view/atac-seq-primary-human-t-cells-overexpressing-batf-c5pfy5jn
Aliases
charles-gersbach:cd8-tcells-atac-seq-acute-activation-gfp-rep2
Publications
Transcriptional and epigenetic regulators of human CD8+ T cell function identified through orthogonal CRISPR screens
Sequencing Results (Illumina)
2 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI5696XKMG
fastq
reads
R2
2
Illumina NextSeq 2000
1
1.7 GB
Charles Gersbach, Duke
validated
IGVFFI9856RTMV
fastq
reads
R1
2
Illumina NextSeq 2000
1
1.7 GB
Charles Gersbach, Duke
validated
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM6851CRLW
PrimaryCell
CD8-positive, alpha-beta memory T cell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO1522NSLA
charles-gersbach:cd8-tcells-donor-10
unspecified
Homo sapiens
File Sets Using This Measurement Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS7714RCSY
AnalysisSet
ATAC-seq: alignments
charles-gersbach:cd8-tcells-intermediate-set-atac-seq-acute-activation-gfp
Charles Gersbach, Duke
Attribution
Award
HG012053
Principal Investigator(s)
Charles Gersbach
,
Gregory Crawford
,
Tim Reddy
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke