{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS5391ZQHQ/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS5391ZQHQ",
"aliases": [
"ali-mortazavi:011_67G_illumina"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003109/",
"assay_slims": [
"gene expression"
],
"status": "released",
"term_name": "single-nucleus RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "NTR term ID",
"detail": "Sample term for [NTR_0000751](/sample-terms/NTR_0000751/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_ntr_term_id",
"path": "/sample-terms/NTR_0000751/"
},
{
"category": "NTR term ID",
"detail": "Sample term for [NTR_0000750](/sample-terms/NTR_0000750/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_ntr_term_id",
"path": "/sample-terms/NTR_0000750/"
},
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS5391ZQHQ](/measurement-sets/IGVFDS5391ZQHQ/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS5391ZQHQ/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS5391ZQHQ](/measurement-sets/IGVFDS5391ZQHQ/) has in progress subobject tabular file [IGVFFI1138MCVX](/tabular-files/IGVFFI1138MCVX/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS5391ZQHQ/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS5391ZQHQ](/measurement-sets/IGVFDS5391ZQHQ/) has in progress subobject tabular file [IGVFFI2591OFQO](/tabular-files/IGVFFI2591OFQO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS5391ZQHQ/"
},
{
"category": "NTR term ID",
"detail": "Sample term for [NTR_0000646](/sample-terms/NTR_0000646/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_ntr_term_id",
"path": "/sample-terms/NTR_0000646/"
},
{
"category": "NTR term ID",
"detail": "Sample term for [NTR_0000647](/sample-terms/NTR_0000647/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_ntr_term_id",
"path": "/sample-terms/NTR_0000647/"
},
{
"category": "mismatched status",
"detail": "Released multiplexed sample [IGVFSM8896JAGW](/multiplexed-samples/IGVFSM8896JAGW/) has in progress subobject tabular file [IGVFFI5536TVIR](/tabular-files/IGVFFI5536TVIR/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM8896JAGW/"
},
{
"category": "missing publication",
"detail": "Multiplexed sample [IGVFSM8896JAGW](/multiplexed-samples/IGVFSM8896JAGW/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/multiplexed-samples/IGVFSM8896JAGW/"
}
]
},
"award": {
"@id": "/awards/HG012077/",
"component": "mapping",
"contact_pi": {
"@id": "/users/2c33e192-e815-4384-a220-72a0992cbe24/",
"title": "Ali Mortazavi"
},
"title": "Center for Mouse Genomic Variation at Single Cell Resolution"
},
"control_for": [],
"creation_timestamp": "2023-10-14T20:41:10.678006+00:00",
"data_use_limitation_summaries": [
"no certificate"
],
"donors": [
{
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"ali-mortazavi:038_129S1J_10F"
],
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},
{
"@id": "/rodent-donors/IGVFDO0681EHNP/",
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],
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},
{
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],
"sex": "female",
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},
{
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],
"sex": "male",
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},
{
"@id": "/rodent-donors/IGVFDO5539RLXJ/",
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],
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},
{
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],
"sex": "female",
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"strain_background": "PWK/PhJ (PWK)",
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},
{
"@id": "/rodent-donors/IGVFDO7007WBAX/",
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],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7610XXRR/",
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],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
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},
{
"@id": "/rodent-donors/IGVFDO9202WGJZ/",
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],
"sex": "male",
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"strain_background": "PWK/PhJ (PWK)",
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},
{
"@id": "/rodent-donors/IGVFDO1643VEDI/",
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],
"sex": "male",
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"strain_background": "C57BL/6J (B6)",
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},
{
"@id": "/rodent-donors/IGVFDO6066JIEJ/",
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],
"sex": "male",
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},
{
"@id": "/rodent-donors/IGVFDO6141KSSQ/",
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],
"sex": "female",
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"strain_background": "C57BL/6J (B6)",
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},
{
"@id": "/rodent-donors/IGVFDO3534MDFF/",
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],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5177QEWF/",
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],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
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},
{
"@id": "/rodent-donors/IGVFDO3436ZMLY/",
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],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6124WGNO/",
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],
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
"@id": "/rodent-donors/IGVFDO8904OIIT/",
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],
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},
{
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],
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},
{
"@id": "/rodent-donors/IGVFDO6112GRYR/",
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],
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},
{
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{
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},
{
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{
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{
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},
{
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},
{
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},
{
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],
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},
{
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],
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},
{
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],
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},
{
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},
{
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],
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},
{
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],
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},
{
"@id": "/rodent-donors/IGVFDO8152XDDC/",
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],
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},
{
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],
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},
{
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],
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},
{
"@id": "/rodent-donors/IGVFDO5523UFUN/",
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],
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},
{
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},
{
"@id": "/rodent-donors/IGVFDO4788BIQB/",
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],
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},
{
"@id": "/rodent-donors/IGVFDO7255VZBN/",
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],
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},
{
"@id": "/rodent-donors/IGVFDO8322VYDU/",
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"aliases": [
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],
"sex": "male",
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"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2292YGGE/",
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],
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},
{
"@id": "/rodent-donors/IGVFDO4725SNCJ/",
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],
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},
{
"@id": "/rodent-donors/IGVFDO0430HQIU/",
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],
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},
{
"@id": "/rodent-donors/IGVFDO1744FDIX/",
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],
"sex": "female",
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"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0624KKTV/",
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],
"sex": "female",
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"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8958JQIY/",
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"aliases": [
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],
"sex": "male",
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{
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],
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],
"lab": {
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"title": "Ali Mortazavi, UCI"
},
"notes": "Preferred_assay_titles enum Parse Split-seq has been renamed to be Parse SPLiT-seq.",
"onlist_files": [
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"/tabular-files/IGVFFI1138MCVX/"
],
"onlist_method": "multi",
"preferred_assay_title": "Parse SPLiT-seq",
"protocols": [
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"https://www.protocols.io/view/evercode-wt-mega-v2-2-1-8epv5xxrng1b/v1",
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],
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"cellular_sub_pool": "011_67G",
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"institutional_certificates": [],
"modifications": [],
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],
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],
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}
],
"status": "released",
"summary": "multiplexed sample: Mus musculus NZO/H1LtJ (female, 69 days) gastrocnemius tissue; Mus musculus NZO/H1LtJ (male, 69 days) left hippocampal formation tissue; ... and 190 more samples",
"taxa": "Mus musculus",
"treatments": []
}
],
"schema_version": "26",
"sequencing_library_types": [
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],
"status": "released",
"strand_specificity": "5 prime to 3 prime",
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