{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS5365VTRX",
"aliases": [
"bradley-bernstein:scRNA Lib 7",
"buenrostro-bernstein:scRNA Lib 7"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002631/",
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM0478TYBC](/primary-cells/IGVFSM0478TYBC/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM0478TYBC/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS5365VTRX](/measurement-sets/IGVFDS5365VTRX/) has sequence file(s): [IGVFFI6497TIWL](/sequence-files/IGVFFI6497TIWL/), [IGVFFI2947BTKZ](/sequence-files/IGVFFI2947BTKZ/), [IGVFFI9783VWID](/sequence-files/IGVFFI9783VWID/), [IGVFFI2344RGLH](/sequence-files/IGVFFI2344RGLH/), [IGVFFI6565VXQJ](/sequence-files/IGVFFI6565VXQJ/), [IGVFFI1245ALTW](/sequence-files/IGVFFI1245ALTW/), [IGVFFI2193NDPV](/sequence-files/IGVFFI2193NDPV/), [IGVFFI7204ZUQE](/sequence-files/IGVFFI7204ZUQE/), [IGVFFI3872OSEN](/sequence-files/IGVFFI3872OSEN/), [IGVFFI5883NHEY](/sequence-files/IGVFFI5883NHEY/), [IGVFFI0388DGPV](/sequence-files/IGVFFI0388DGPV/), [IGVFFI8791FDTI](/sequence-files/IGVFFI8791FDTI/), [IGVFFI1703CMSI](/sequence-files/IGVFFI1703CMSI/), [IGVFFI6680MMKX](/sequence-files/IGVFFI6680MMKX/), [IGVFFI6648MDGH](/sequence-files/IGVFFI6648MDGH/), [IGVFFI4185WCTI](/sequence-files/IGVFFI4185WCTI/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS5365VTRX/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS5365VTRX](/measurement-sets/IGVFDS5365VTRX/) has an `assay_term` of single-cell RNA sequencing assay but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS5365VTRX/"
}
]
},
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},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
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],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 2), male, Homo sapiens (26 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:23:23.982941+00:00",
"summary": "single-cell RNA sequencing assay (SHARE-seq)",
"uuid": "3ea91d54-0a72-4859-bd9c-787a797449be"
}