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IGVFDS5362QJCF

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (male, 53 years) middle temporal gyrus tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 14 more samples
Protocols
Aliases
igvf:corces_measurementSet_RP011_G3_ATAC
Attribution
Ryan Corces, Gladstone Institute UCSF

Sequencing Results (Illumina)

16 items
Read Names
fastq
reads
I1
1
225CCCLT3
8
412 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
225CCCLT3
7
403 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
225CCCLT3
6
381 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R3
1
Read 2
225CCCLT3
5
1.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Barcode index
225CCCLT3
7
988 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
225CCCLT3
8
1.8 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R3
1
Read 2
225CCCLT3
8
1.8 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Barcode index
225CCCLT3
8
1.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R3
1
Read 2
225CCCLT3
6
1.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Barcode index
225CCCLT3
6
915 MB
Ryan Corces, Gladstone Institute UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male, 53 years) middle temporal gyrus tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 14 more samples

Donors

16 items
Aliases
  • igvf:corces_donor_BANN1569
male
Homo sapiens
  • igvf:corces_donor_BANN0560
male
Homo sapiens
  • igvf:corces_donor_BANN1063
male
Homo sapiens
  • igvf:corces_donor_BANN1827
male
Homo sapiens
  • igvf:corces_donor_BANN1340
male
Homo sapiens
  • igvf:corces_donor_BANN1256
female
Homo sapiens
  • igvf:corces_donor_BANN0950
male
Homo sapiens
  • igvf:corces_donor_BANN0002
male
Homo sapiens
  • igvf:corces_donor_BANN1959
male
Homo sapiens
  • igvf:corces_donor_BANN1839
female
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_RP011_G3_RNA
Ryan Corces, Gladstone Institute UCSF