IGVFDS5353UEDG

released
GRU
1{
2    "@context": "/terms/",
3    "@id": "/measurement-sets/IGVFDS5353UEDG/",
4    "@type": [
5        "MeasurementSet",
6        "FileSet",
7        "Item"
8    ],
9    "accession": "IGVFDS5353UEDG",
10    "aliases": [
11        "buenrostro-bernstein:scATAC Lib 458"
12    ],
13    "assay_term": {
14        "@id": "/assay-terms/OBI_0002764/",
15        "assay_slims": [
16            "chromatin accessibility"
17        ],
18        "status": "released",
19        "term_name": "single-cell ATAC-seq"
20    },
21    "audit": {
22        "INTERNAL_ACTION": [
23            {
24                "category": "missing publication",
25                "detail": "Measurement set [IGVFDS5353UEDG](/measurement-sets/IGVFDS5353UEDG/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
26                "level": 30,
27                "level_name": "INTERNAL_ACTION",
28                "name": "audit_file_set_missing_publication",
29                "path": "/measurement-sets/IGVFDS5353UEDG/"
30            },
31            {
32                "category": "mismatched status",
33                "detail": "Released measurement set [IGVFDS5353UEDG](/measurement-sets/IGVFDS5353UEDG/) has in progress subobject tabular file [IGVFFI0400MBIM](/tabular-files/IGVFFI0400MBIM/).",
34                "level": 30,
35                "level_name": "INTERNAL_ACTION",
36                "name": "audit_item_status",
37                "path": "/measurement-sets/IGVFDS5353UEDG/"
38            },
39            {
40                "category": "mismatched status",
41                "detail": "Released measurement set [IGVFDS5353UEDG](/measurement-sets/IGVFDS5353UEDG/) has in progress subobject tabular file [IGVFFI5522PXUM](/tabular-files/IGVFFI5522PXUM/).",
42                "level": 30,
43                "level_name": "INTERNAL_ACTION",
44                "name": "audit_item_status",
45                "path": "/measurement-sets/IGVFDS5353UEDG/"
46            },
47            {
48                "category": "missing publication",
49                "detail": "In vitro system [IGVFSM6586WELX](/in-vitro-systems/IGVFSM6586WELX/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
50                "level": 30,
51                "level_name": "INTERNAL_ACTION",
52                "name": "audit_sample_missing_publication",
53                "path": "/in-vitro-systems/IGVFSM6586WELX/"
54            }
55        ]
56    },
57    "award": {
58        "@id": "/awards/HG011986/",
59        "component": "mapping",
60        "contact_pi": {
61            "@id": "/users/33c6eb70-e143-4f77-9661-4b3905737daa/",
62            "title": "Jason Buenrostro"
63        },
64        "title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
65    },
66    "control_for": [],
67    "controlled_access": true,
68    "creation_timestamp": "2024-08-20T15:00:49.332291+00:00",
69    "data_use_limitation_summaries": [
70        "GRU"
71    ],
72    "donors": [
73        {
74            "@id": "/human-donors/IGVFDO6694QTLS/",
75            "accession": "IGVFDO6694QTLS",
76            "aliases": [
77                "buenrostro-bernstein:Donor 1826"
78            ],
79            "sex": "unspecified",
80            "status": "released",
81            "taxa": "Homo sapiens"
82        },
83        {
84            "@id": "/human-donors/IGVFDO2664ZLXL/",
85            "accession": "IGVFDO2664ZLXL",
86            "aliases": [
87                "buenrostro-bernstein:Donor 1891"
88            ],
89            "sex": "unspecified",
90            "status": "released",
91            "taxa": "Homo sapiens"
92        },
93        {
94            "@id": "/human-donors/IGVFDO8776OLQD/",
95            "accession": "IGVFDO8776OLQD",
96            "aliases": [
97                "buenrostro-bernstein:Donor 1744"
98            ],
99            "sex": "unspecified",
100            "status": "released",
101            "taxa": "Homo sapiens"
102        },
103        {
104            "@id": "/human-donors/IGVFDO5074GHND/",
105            "accession": "IGVFDO5074GHND",
106            "aliases": [
107                "buenrostro-bernstein:Donor 1890"
108            ],
109            "sex": "unspecified",
110            "status": "released",
111            "taxa": "Homo sapiens"
112        },
113        {
114            "@id": "/human-donors/IGVFDO1318DUVG/",
115            "accession": "IGVFDO1318DUVG",
116            "aliases": [
117                "buenrostro-bernstein:Donor 1833"
118            ],
119            "sex": "unspecified",
120            "status": "released",
121            "taxa": "Homo sapiens"
122        },
123        {
124            "@id": "/human-donors/IGVFDO0455AULY/",
125            "accession": "IGVFDO0455AULY",
126            "aliases": [
127                "buenrostro-bernstein:Donor 1814"
128            ],
129            "sex": "unspecified",
130            "status": "released",
131            "taxa": "Homo sapiens"
132        },
133        {
134            "@id": "/human-donors/IGVFDO6704FGWL/",
135            "accession": "IGVFDO6704FGWL",
136            "aliases": [
137                "buenrostro-bernstein:Donor 1875"
138            ],
139            "sex": "unspecified",
140            "status": "released",
141            "taxa": "Homo sapiens"
142        },
143        {
144            "@id": "/human-donors/IGVFDO4222QOSB/",
145            "accession": "IGVFDO4222QOSB",
146            "aliases": [
147                "buenrostro-bernstein:Donor 1827"
148            ],
149            "sex": "unspecified",
150            "status": "released",
151            "taxa": "Homo sapiens"
152        },
153        {
154            "@id": "/human-donors/IGVFDO2453FLSI/",
155            "accession": "IGVFDO2453FLSI",
156            "aliases": [
157                "buenrostro-bernstein:Donor 1832"
158            ],
159            "sex": "unspecified",
160            "status": "released",
161            "taxa": "Homo sapiens"
162        },
163        {
164            "@id": "/human-donors/IGVFDO1778GJAD/",
165            "accession": "IGVFDO1778GJAD",
166            "aliases": [
167                "buenrostro-bernstein:Donor 1778"
168            ],
169            "sex": "unspecified",
170            "status": "released",
171            "taxa": "Homo sapiens"
172        },
173        {
174            "@id": "/human-donors/IGVFDO0392YIJG/",
175            "accession": "IGVFDO0392YIJG",
176            "aliases": [
177                "buenrostro-bernstein:Donor 1892"
178            ],
179            "sex": "unspecified",
180            "status": "released",
181            "taxa": "Homo sapiens"
182        },
183        {
184            "@id": "/human-donors/IGVFDO0186ZZOL/",
185            "accession": "IGVFDO0186ZZOL",
186            "aliases": [
187                "buenrostro-bernstein:Donor 1862"
188            ],
189            "sex": "unspecified",
190            "status": "released",
191            "taxa": "Homo sapiens"
192        },
193        {
194            "@id": "/human-donors/IGVFDO5446TLJJ/",
195            "accession": "IGVFDO5446TLJJ",
196            "aliases": [
197                "buenrostro-bernstein:Donor 1894"
198            ],
199            "sex": "unspecified",
200            "status": "released",
201            "taxa": "Homo sapiens"
202        },
203        {
204            "@id": "/human-donors/IGVFDO0144AKUR/",
205            "accession": "IGVFDO0144AKUR",
206            "aliases": [
207                "buenrostro-bernstein:Donor 1850"
208            ],
209            "sex": "unspecified",
210            "status": "released",
211            "taxa": "Homo sapiens"
212        },
213        {
214            "@id": "/human-donors/IGVFDO6675DJLJ/",
215            "accession": "IGVFDO6675DJLJ",
216            "aliases": [
217                "buenrostro-bernstein:Donor 1837"
218            ],
219            "sex": "unspecified",
220            "status": "released",
221            "taxa": "Homo sapiens"
222        },
223        {
224            "@id": "/human-donors/IGVFDO1502TPVD/",
225            "accession": "IGVFDO1502TPVD",
226            "aliases": [
227                "buenrostro-bernstein:Donor 1849"
228            ],
229            "sex": "unspecified",
230            "status": "released",
231            "taxa": "Homo sapiens"
232        },
233        {
234            "@id": "/human-donors/IGVFDO0143YSWQ/",
235            "accession": "IGVFDO0143YSWQ",
236            "aliases": [
237                "buenrostro-bernstein:Donor 1860"
238            ],
239            "sex": "unspecified",
240            "status": "released",
241            "taxa": "Homo sapiens"
242        },
243        {
244            "@id": "/human-donors/IGVFDO5686BULO/",
245            "accession": "IGVFDO5686BULO",
246            "aliases": [
247                "buenrostro-bernstein:Donor 1870"
248            ],
249            "sex": "unspecified",
250            "status": "released",
251            "taxa": "Homo sapiens"
252        },
253        {
254            "@id": "/human-donors/IGVFDO1165TQMX/",
255            "accession": "IGVFDO1165TQMX",
256            "aliases": [
257                "buenrostro-bernstein:Donor 1887"
258            ],
259            "sex": "unspecified",
260            "status": "released",
261            "taxa": "Homo sapiens"
262        },
263        {
264            "@id": "/human-donors/IGVFDO6626TJEC/",
265            "accession": "IGVFDO6626TJEC",
266            "aliases": [
267                "buenrostro-bernstein:Donor 1888"
268            ],
269            "sex": "unspecified",
270            "status": "released",
271            "taxa": "Homo sapiens"
272        },
273        {
274            "@id": "/human-donors/IGVFDO5895ABMM/",
275            "accession": "IGVFDO5895ABMM",
276            "aliases": [
277                "buenrostro-bernstein:Donor 1824"
278            ],
279            "sex": "unspecified",
280            "status": "released",
281            "taxa": "Homo sapiens"
282        },
283        {
284            "@id": "/human-donors/IGVFDO3154SUBV/",
285            "accession": "IGVFDO3154SUBV",
286            "aliases": [
287                "buenrostro-bernstein:Donor 1746"
288            ],
289            "sex": "unspecified",
290            "status": "released",
291            "taxa": "Homo sapiens"
292        },
293        {
294            "@id": "/human-donors/IGVFDO5829IPZL/",
295            "accession": "IGVFDO5829IPZL",
296            "aliases": [
297                "buenrostro-bernstein:Donor 1772"
298            ],
299            "sex": "unspecified",
300            "status": "released",
301            "taxa": "Homo sapiens"
302        },
303        {
304            "@id": "/human-donors/IGVFDO8772PWON/",
305            "accession": "IGVFDO8772PWON",
306            "aliases": [
307                "buenrostro-bernstein:Donor 1873"
308            ],
309            "sex": "unspecified",
310            "status": "released",
311            "taxa": "Homo sapiens"
312        },
313        {
314            "@id": "/human-donors/IGVFDO2628QOSP/",
315            "accession": "IGVFDO2628QOSP",
316            "aliases": [
317                "buenrostro-bernstein:Donor 1830"
318            ],
319            "sex": "unspecified",
320            "status": "released",
321            "taxa": "Homo sapiens"
322        },
323        {
324            "@id": "/human-donors/IGVFDO6316KUFG/",
325            "accession": "IGVFDO6316KUFG",
326            "aliases": [
327                "buenrostro-bernstein:Donor 1871"
328            ],
329            "sex": "unspecified",
330            "status": "released",
331            "taxa": "Homo sapiens"
332        },
333        {
334            "@id": "/human-donors/IGVFDO0285FFEG/",
335            "accession": "IGVFDO0285FFEG",
336            "aliases": [
337                "buenrostro-bernstein:Donor 1828"
338            ],
339            "sex": "unspecified",
340            "status": "released",
341            "taxa": "Homo sapiens"
342        },
343        {
344            "@id": "/human-donors/IGVFDO2298PENP/",
345            "accession": "IGVFDO2298PENP",
346            "aliases": [
347                "buenrostro-bernstein:Donor 1879"
348            ],
349            "sex": "unspecified",
350            "status": "released",
351            "taxa": "Homo sapiens"
352        },
353        {
354            "@id": "/human-donors/IGVFDO2343ZVKW/",
355            "accession": "IGVFDO2343ZVKW",
356            "aliases": [
357                "buenrostro-bernstein:Donor 1869"
358            ],
359            "sex": "unspecified",
360            "status": "released",
361            "taxa": "Homo sapiens"
362        },
363        {
364            "@id": "/human-donors/IGVFDO6553AADC/",
365            "accession": "IGVFDO6553AADC",
366            "aliases": [
367                "buenrostro-bernstein:Donor 1841"
368            ],
369            "sex": "unspecified",
370            "status": "released",
371            "taxa": "Homo sapiens"
372        },
373        {
374            "@id": "/human-donors/IGVFDO2627YUXH/",
375            "accession": "IGVFDO2627YUXH",
376            "aliases": [
377                "buenrostro-bernstein:Donor 1886"
378            ],
379            "sex": "unspecified",
380            "status": "released",
381            "taxa": "Homo sapiens"
382        },
383        {
384            "@id": "/human-donors/IGVFDO3184WKWK/",
385            "accession": "IGVFDO3184WKWK",
386            "aliases": [
387                "buenrostro-bernstein:Donor 1861"
388            ],
389            "sex": "unspecified",
390            "status": "released",
391            "taxa": "Homo sapiens"
392        },
393        {
394            "@id": "/human-donors/IGVFDO2131TKFT/",
395            "accession": "IGVFDO2131TKFT",
396            "aliases": [
397                "buenrostro-bernstein:Donor 1811"
398            ],
399            "sex": "unspecified",
400            "status": "released",
401            "taxa": "Homo sapiens"
402        },
403        {
404            "@id": "/human-donors/IGVFDO9737GFZX/",
405            "accession": "IGVFDO9737GFZX",
406            "aliases": [
407                "buenrostro-bernstein:Donor 1839"
408            ],
409            "sex": "unspecified",
410            "status": "released",
411            "taxa": "Homo sapiens"
412        },
413        {
414            "@id": "/human-donors/IGVFDO7983CLUG/",
415            "accession": "IGVFDO7983CLUG",
416            "aliases": [
417                "buenrostro-bernstein:Donor 1852"
418            ],
419            "sex": "unspecified",
420            "status": "released",
421            "taxa": "Homo sapiens"
422        },
423        {
424            "@id": "/human-donors/IGVFDO4451SLQW/",
425            "accession": "IGVFDO4451SLQW",
426            "aliases": [
427                "buenrostro-bernstein:Donor 1789"
428            ],
429            "sex": "unspecified",
430            "status": "released",
431            "taxa": "Homo sapiens"
432        },
433        {
434            "@id": "/human-donors/IGVFDO3364ORGK/",
435            "accession": "IGVFDO3364ORGK",
436            "aliases": [
437                "buenrostro-bernstein:Donor 1897"
438            ],
439            "sex": "unspecified",
440            "status": "released",
441            "taxa": "Homo sapiens"
442        },
443        {
444            "@id": "/human-donors/IGVFDO0674VHCY/",
445            "accession": "IGVFDO0674VHCY",
446            "aliases": [
447                "buenrostro-bernstein:Donor 1896"
448            ],
449            "sex": "unspecified",
450            "status": "released",
451            "taxa": "Homo sapiens"
452        },
453        {
454            "@id": "/human-donors/IGVFDO4689NFPC/",
455            "accession": "IGVFDO4689NFPC",
456            "aliases": [
457                "buenrostro-bernstein:Donor 1770"
458            ],
459            "sex": "unspecified",
460            "status": "released",
461            "taxa": "Homo sapiens"
462        },
463        {
464            "@id": "/human-donors/IGVFDO0436YOXD/",
465            "accession": "IGVFDO0436YOXD",
466            "aliases": [
467                "buenrostro-bernstein:Donor 1745"
468            ],
469            "sex": "unspecified",
470            "status": "released",
471            "taxa": "Homo sapiens"
472        },
473        {
474            "@id": "/human-donors/IGVFDO3707NTZB/",
475            "accession": "IGVFDO3707NTZB",
476            "aliases": [
477                "buenrostro-bernstein:Donor 1853"
478            ],
479            "sex": "unspecified",
480            "status": "released",
481            "taxa": "Homo sapiens"
482        },
483        {
484            "@id": "/human-donors/IGVFDO6890GKJS/",
485            "accession": "IGVFDO6890GKJS",
486            "aliases": [
487                "buenrostro-bernstein:Donor 1836"
488            ],
489            "sex": "unspecified",
490            "status": "released",
491            "taxa": "Homo sapiens"
492        },
493        {
494            "@id": "/human-donors/IGVFDO6720KIII/",
495            "accession": "IGVFDO6720KIII",
496            "aliases": [
497                "buenrostro-bernstein:Donor 1868"
498            ],
499            "sex": "unspecified",
500            "status": "released",
501            "taxa": "Homo sapiens"
502        },
503        {
504            "@id": "/human-donors/IGVFDO6556DSRS/",
505            "accession": "IGVFDO6556DSRS",
506            "aliases": [
507                "buenrostro-bernstein:Donor 1848"
508            ],
509            "sex": "unspecified",
510            "status": "released",
511            "taxa": "Homo sapiens"
512        },
513        {
514            "@id": "/human-donors/IGVFDO4197GLLD/",
515            "accession": "IGVFDO4197GLLD",
516            "aliases": [
517                "buenrostro-bernstein:Donor 1866"
518            ],
519            "sex": "unspecified",
520            "status": "released",
521            "taxa": "Homo sapiens"
522        },
523        {
524            "@id": "/human-donors/IGVFDO7476FWEA/",
525            "accession": "IGVFDO7476FWEA",
526            "aliases": [
527                "buenrostro-bernstein:Donor 1851"
528            ],
529            "sex": "unspecified",
530            "status": "released",
531            "taxa": "Homo sapiens"
532        },
533        {
534            "@id": "/human-donors/IGVFDO5257YVJL/",
535            "accession": "IGVFDO5257YVJL",
536            "aliases": [
537                "buenrostro-bernstein:Donor 1825"
538            ],
539            "sex": "unspecified",
540            "status": "released",
541            "taxa": "Homo sapiens"
542        },
543        {
544            "@id": "/human-donors/IGVFDO8250RHCQ/",
545            "accession": "IGVFDO8250RHCQ",
546            "aliases": [
547                "buenrostro-bernstein:Donor 1854"
548            ],
549            "sex": "unspecified",
550            "status": "released",
551            "taxa": "Homo sapiens"
552        },
553        {
554            "@id": "/human-donors/IGVFDO9301UFXR/",
555            "accession": "IGVFDO9301UFXR",
556            "aliases": [
557                "buenrostro-bernstein:Donor 1815"
558            ],
559            "sex": "unspecified",
560            "status": "released",
561            "taxa": "Homo sapiens"
562        },
563        {
564            "@id": "/human-donors/IGVFDO1697JGEF/",
565            "accession": "IGVFDO1697JGEF",
566            "aliases": [
567                "buenrostro-bernstein:Donor 1835"
568            ],
569            "sex": "unspecified",
570            "status": "released",
571            "taxa": "Homo sapiens"
572        },
573        {
574            "@id": "/human-donors/IGVFDO2028ZXZQ/",
575            "accession": "IGVFDO2028ZXZQ",
576            "aliases": [
577                "buenrostro-bernstein:Donor 1820"
578            ],
579            "sex": "unspecified",
580            "status": "released",
581            "taxa": "Homo sapiens"
582        },
583        {
584            "@id": "/human-donors/IGVFDO8404YTWG/",
585            "accession": "IGVFDO8404YTWG",
586            "aliases": [
587                "buenrostro-bernstein:Donor 1865"
588            ],
589            "sex": "unspecified",
590            "status": "released",
591            "taxa": "Homo sapiens"
592        },
593        {
594            "@id": "/human-donors/IGVFDO6837BSOS/",
595            "accession": "IGVFDO6837BSOS",
596            "aliases": [
597                "buenrostro-bernstein:Donor 1812"
598            ],
599            "sex": "unspecified",
600            "status": "released",
601            "taxa": "Homo sapiens"
602        },
603        {
604            "@id": "/human-donors/IGVFDO7956CWXZ/",
605            "accession": "IGVFDO7956CWXZ",
606            "aliases": [
607                "buenrostro-bernstein:Donor 1821"
608            ],
609            "sex": "unspecified",
610            "status": "released",
611            "taxa": "Homo sapiens"
612        },
613        {
614            "@id": "/human-donors/IGVFDO0233FJJF/",
615            "accession": "IGVFDO0233FJJF",
616            "aliases": [
617                "buenrostro-bernstein:Donor 1834"
618            ],
619            "sex": "unspecified",
620            "status": "released",
621            "taxa": "Homo sapiens"
622        },
623        {
624            "@id": "/human-donors/IGVFDO2142TSPQ/",
625            "accession": "IGVFDO2142TSPQ",
626            "aliases": [
627                "buenrostro-bernstein:Donor 1881"
628            ],
629            "sex": "unspecified",
630            "status": "released",
631            "taxa": "Homo sapiens"
632        },
633        {
634            "@id": "/human-donors/IGVFDO3170VPEQ/",
635            "accession": "IGVFDO3170VPEQ",
636            "aliases": [
637                "buenrostro-bernstein:Donor 1864"
638            ],
639            "sex": "unspecified",
640            "status": "released",
641            "taxa": "Homo sapiens"
642        },
643        {
644            "@id": "/human-donors/IGVFDO0452ROLO/",
645            "accession": "IGVFDO0452ROLO",
646            "aliases": [
647                "buenrostro-bernstein:Donor 1867"
648            ],
649            "sex": "unspecified",
650            "status": "released",
651            "taxa": "Homo sapiens"
652        },
653        {
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1866            "submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI9196VWPU_seqspec.yaml.gz",
1867            "upload_status": "validated"
1868        },
1869        {
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1871            "accession": "IGVFFI2098RIMM",
1872            "aliases": [
1873                "buenrostro-bernstein:SS-LS_8768_seqspec"
1874            ],
1875            "content_type": "seqspec",
1876            "creation_timestamp": "2025-03-28T18:54:07.504075+00:00",
1877            "file_format": "yaml",
1878            "file_size": 1333,
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1880            "md5sum": "de36a54a0888a3914e20329b6e785514",
1881            "s3_uri": "s3://igvf-files/2025/03/28/d16dda62-51fc-4c03-baf1-486049698186/IGVFFI2098RIMM.yaml.gz",
1882            "status": "released",
1883            "submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI2569SRBH_seqspec.yaml.gz",
1884            "upload_status": "validated"
1885        },
1886        {
1887            "@id": "/configuration-files/IGVFFI9843CGND/",
1888            "accession": "IGVFFI9843CGND",
1889            "aliases": [
1890                "buenrostro-bernstein:SS-LS_8864_seqspec"
1891            ],
1892            "content_type": "seqspec",
1893            "creation_timestamp": "2025-03-28T19:19:43.042823+00:00",
1894            "file_format": "yaml",
1895            "file_size": 1330,
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1897            "md5sum": "f1695c68f9c5abbc7b857621d29fde76",
1898            "s3_uri": "s3://igvf-files/2025/03/28/b516fda8-92da-4947-b3b2-2eed8bb23770/IGVFFI9843CGND.yaml.gz",
1899            "status": "released",
1900            "submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI2421OIHS_seqspec.yaml.gz",
1901            "upload_status": "validated"
1902        },
1903        {
1904            "@id": "/configuration-files/IGVFFI1021CCBY/",
1905            "accession": "IGVFFI1021CCBY",
1906            "aliases": [
1907                "buenrostro-bernstein:SS-LS_9056_seqspec"
1908            ],
1909            "content_type": "seqspec",
1910            "creation_timestamp": "2025-03-28T19:53:03.520388+00:00",
1911            "file_format": "yaml",
1912            "file_size": 1330,
1913            "href": "/configuration-files/IGVFFI1021CCBY/@@download/IGVFFI1021CCBY.yaml.gz",
1914            "md5sum": "d8bea212138e2405d6b12484a621823c",
1915            "s3_uri": "s3://igvf-files/2025/03/28/26d39c3a-7415-45a2-a813-d1f8e32d249e/IGVFFI1021CCBY.yaml.gz",
1916            "status": "released",
1917            "submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI5726ANKN_seqspec.yaml.gz",
1918            "upload_status": "validated"
1919        },
1920        {
1921            "@id": "/configuration-files/IGVFFI3476ODSC/",
1922            "accession": "IGVFFI3476ODSC",
1923            "aliases": [
1924                "buenrostro-bernstein:SS-LS_9152_seqspec"
1925            ],
1926            "content_type": "seqspec",
1927            "creation_timestamp": "2025-03-28T20:10:45.512398+00:00",
1928            "file_format": "yaml",
1929            "file_size": 1329,
1930            "href": "/configuration-files/IGVFFI3476ODSC/@@download/IGVFFI3476ODSC.yaml.gz",
1931            "md5sum": "4011d62f421a3cfe19cf9a7b7281dd77",
1932            "s3_uri": "s3://igvf-files/2025/03/28/83f0092c-cc78-478e-99e3-5beb03cb1d52/IGVFFI3476ODSC.yaml.gz",
1933            "status": "released",
1934            "submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI8663FPPT_seqspec.yaml.gz",
1935            "upload_status": "validated"
1936        }
1937    ],
1938    "input_for": [
1939        "/analysis-sets/IGVFDS8464JJFK/"
1940    ],
1941    "lab": {
1942        "@id": "/labs/jason-buenrostro/",
1943        "title": "Jason Buenrostro, Broad"
1944    },
1945    "multiome_size": 2,
1946    "onlist_files": [
1947        "/tabular-files/IGVFFI5522PXUM/",
1948        "/tabular-files/IGVFFI0400MBIM/"
1949    ],
1950    "onlist_method": "product",
1951    "preferred_assay_title": "SHARE-seq",
1952    "protocols": [
1953        "https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw"
1954    ],
1955    "related_multiome_datasets": [
1956        {
1957            "@id": "/measurement-sets/IGVFDS8482DUCG/",
1958            "accession": "IGVFDS8482DUCG",
1959            "status": "released"
1960        }
1961    ],
1962    "release_timestamp": "2025-04-22T04:12:48.540972+00:00",
1963    "samples": [
1964        {
1965            "@id": "/in-vitro-systems/IGVFSM6586WELX/",
1966            "@type": [
1967                "InVitroSystem",
1968                "Biosample",
1969                "Sample",
1970                "Item"
1971            ],
1972            "accession": "IGVFSM6586WELX",
1973            "aliases": [
1974                "buenrostro-bernstein:BioSam 4882_SS-PKR 182"
1975            ],
1976            "cellular_sub_pool": "SS-PKR 182",
1977            "classifications": [
1978                "pooled cell specimen",
1979                "differentiated cell specimen"
1980            ],
1981            "institutional_certificates": [
1982                {
1983                    "@id": "/institutional-certificates/26d0a66b-5c86-4326-b305-806fb13d2ae5/",
1984                    "certificate_identifier": "IP113-01",
1985                    "controlled_access": true,
1986                    "data_use_limitation": "GRU",
1987                    "status": "released"
1988                },
1989                {
1990                    "@id": "/institutional-certificates/31aa03ce-8ec8-409b-8a6c-c115297c10f4/",
1991                    "certificate_identifier": "IP113-02",
1992                    "controlled_access": true,
1993                    "data_use_limitation": "GRU",
1994                    "status": "released"
1995                },
1996                {
1997                    "@id": "/institutional-certificates/07b1e07f-a66a-4bd5-9c1a-a8632e734789/",
1998                    "certificate_identifier": "IP113-03",
1999                    "controlled_access": true,
2000                    "data_use_limitation": "GRU",
2001                    "status": "released"
2002                },
2003                {
2004                    "@id": "/institutional-certificates/3c3d7aa1-227e-43c8-8c68-2d3ad8e280b9/",
2005                    "certificate_identifier": "IP113-04",
2006                    "controlled_access": true,
2007                    "data_use_limitation": "GRU",
2008                    "status": "released"
2009                },
2010                {
2011                    "@id": "/institutional-certificates/dff99f30-9e29-4410-bdb4-eed4b70432cf/",
2012                    "certificate_identifier": "IP113-05",
2013                    "controlled_access": true,
2014                    "data_use_limitation": "GRU",
2015                    "status": "released"
2016                },
2017                {
2018                    "@id": "/institutional-certificates/10318039-d9e6-4dd0-8d92-4c551493b9fe/",
2019                    "certificate_identifier": "IP113-06",
2020                    "controlled_access": true,
2021                    "data_use_limitation": "GRU",
2022                    "status": "released"
2023                },
2024                {
2025                    "@id": "/institutional-certificates/32e245d0-ae4b-4334-b826-ed5bf00f111f/",
2026                    "certificate_identifier": "IP113-07",
2027                    "controlled_access": true,
2028                    "data_use_limitation": "GRU",
2029                    "status": "released"
2030                },
2031                {
2032                    "@id": "/institutional-certificates/35c8ed2e-cf1b-4cdd-a6ee-e766e7c3d954/",
2033                    "certificate_identifier": "IP113-08",
2034                    "controlled_access": true,
2035                    "data_use_limitation": "GRU",
2036                    "status": "released"
2037                },
2038                {
2039                    "@id": "/institutional-certificates/70134af2-c4fd-43b4-96a6-9133a119a715/",
2040                    "certificate_identifier": "IP113-09",
2041                    "controlled_access": true,
2042                    "data_use_limitation": "GRU",
2043                    "status": "released"
2044                },
2045                {
2046                    "@id": "/institutional-certificates/8a10acc0-7e24-4912-8833-10141ccf9b5f/",
2047                    "certificate_identifier": "IP113-10",
2048                    "controlled_access": true,
2049                    "data_use_limitation": "GRU",
2050                    "status": "released"
2051                },
2052                {
2053                    "@id": "/institutional-certificates/21c46421-0482-4d0d-ad82-99387fc6add6/",
2054                    "certificate_identifier": "IP113-11",
2055                    "controlled_access": true,
2056                    "data_use_limitation": "GRU",
2057                    "status": "released"
2058                },
2059                {
2060                    "@id": "/institutional-certificates/b117b3dd-25d9-4262-a262-630852050446/",
2061                    "certificate_identifier": "IP113-12",
2062                    "controlled_access": true,
2063                    "data_use_limitation": "GRU",
2064                    "status": "released"
2065                },
2066                {
2067                    "@id": "/institutional-certificates/ae438897-696e-4b7a-98a2-e72438a76b31/",
2068                    "certificate_identifier": "IP113-13",
2069                    "controlled_access": true,
2070                    "data_use_limitation": "GRU",
2071                    "status": "released"
2072                },
2073                {
2074                    "@id": "/institutional-certificates/4542d787-ea26-4176-b01c-5c45ca11b802/",
2075                    "certificate_identifier": "IP113-14",
2076                    "controlled_access": true,
2077                    "data_use_limitation": "GRU",
2078                    "status": "released"
2079                },
2080                {
2081                    "@id": "/institutional-certificates/74917306-afc2-447b-88b2-a97e3e758518/",
2082                    "certificate_identifier": "IP113-15",
2083                    "controlled_access": true,
2084                    "data_use_limitation": "GRU",
2085                    "status": "released"
2086                },
2087                {
2088                    "@id": "/institutional-certificates/fc5dc734-179b-45b8-bb32-e4f57a6bf59c/",
2089                    "certificate_identifier": "IP113-16",
2090                    "controlled_access": true,
2091                    "data_use_limitation": "GRU",
2092                    "status": "released"
2093                },
2094                {
2095                    "@id": "/institutional-certificates/cf9e5e74-e4e6-40d4-bf04-c86fafe9d17e/",
2096                    "certificate_identifier": "IP113-17",
2097                    "controlled_access": true,
2098                    "data_use_limitation": "GRU",
2099                    "status": "released"
2100                },
2101                {
2102                    "@id": "/institutional-certificates/ebddd6b0-c53f-4e05-a451-b5167df7cebd/",
2103                    "certificate_identifier": "IP113-18",
2104                    "controlled_access": true,
2105                    "data_use_limitation": "GRU",
2106                    "status": "released"
2107                },
2108                {
2109                    "@id": "/institutional-certificates/109b8309-9842-4caa-80f7-9f3d1be0c8c1/",
2110                    "certificate_identifier": "IP113-19",
2111                    "controlled_access": true,
2112                    "data_use_limitation": "GRU",
2113                    "status": "released"
2114                },
2115                {
2116                    "@id": "/institutional-certificates/d1431ff4-0095-49ba-a179-5fe34043afeb/",
2117                    "certificate_identifier": "IP113-20",
2118                    "controlled_access": true,
2119                    "data_use_limitation": "GRU",
2120                    "status": "released"
2121                }
2122            ],
2123            "sample_terms": [
2124                {
2125                    "@id": "/sample-terms/EFO_0004905/",
2126                    "@type": [
2127                        "SampleTerm",
2128                        "OntologyTerm",
2129                        "Item"
2130                    ],
2131                    "status": "released",
2132                    "summary": "induced pluripotent stem cell",
2133                    "term_name": "induced pluripotent stem cell"
2134                }
2135            ],
2136            "status": "released",
2137            "summary": "Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to hepatic oval stem cell for 7 days (cellular sub pool: SS-PKR 182)",
2138            "targeted_sample_term": {
2139                "@id": "/sample-terms/CL_0002196/",
2140                "status": "released",
2141                "term_name": "hepatic oval stem cell"
2142            },
2143            "taxa": "Homo sapiens"
2144        }
2145    ],
2146    "schema_version": "26",
2147    "status": "released",
2148    "submitted_by": {
2149        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
2150        "title": "Siddarth Wekhande"
2151    },
2152    "submitted_files_timestamp": "2024-08-20T15:25:11.219692+00:00",
2153    "summary": "single-cell ATAC-seq (SHARE-seq)",
2154    "uuid": "cb0b3474-1878-430d-9387-1bc2099d28b8"
2155}