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{
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"detail": "Measurement set [IGVFDS5292TDBG](/measurement-sets/IGVFDS5292TDBG/) has sequence file(s): [IGVFFI1144SLXH](/sequence-files/IGVFFI1144SLXH/), [IGVFFI1831UNJY](/sequence-files/IGVFFI1831UNJY/), [IGVFFI1255VGLJ](/sequence-files/IGVFFI1255VGLJ/), [IGVFFI1526BGGU](/sequence-files/IGVFFI1526BGGU/), [IGVFFI5205JGKO](/sequence-files/IGVFFI5205JGKO/), [IGVFFI8261OLTY](/sequence-files/IGVFFI8261OLTY/), [IGVFFI7453ZCHV](/sequence-files/IGVFFI7453ZCHV/), [IGVFFI5940TQOL](/sequence-files/IGVFFI5940TQOL/), [IGVFFI8574SYOF](/sequence-files/IGVFFI8574SYOF/), [IGVFFI5357XDVJ](/sequence-files/IGVFFI5357XDVJ/), [IGVFFI9408SFAX](/sequence-files/IGVFFI9408SFAX/), [IGVFFI1039EATX](/sequence-files/IGVFFI1039EATX/) which do not have any `seqspecs`. Sequence files in a file set associated with single cell data are expected to link to a sequence specification file.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS5292TDBG/"
},
{
"category": "missing strand specificity",
"detail": "Measurement set [IGVFDS5292TDBG](/measurement-sets/IGVFDS5292TDBG/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_strand_specificity",
"path": "/measurement-sets/IGVFDS5292TDBG/"
}
],
"WARNING": [
{
"category": "missing analysis",
"detail": "Measurement set [IGVFDS5292TDBG](/measurement-sets/IGVFDS5292TDBG/) is a raw data set with files, but is not listed in any `input_file_sets` for any analysis sets. Raw data sets with files are expected to be associated with at least one analysis set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_input_for",
"path": "/measurement-sets/IGVFDS5292TDBG/"
}
]
},
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},
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},
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],
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},
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],
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},
{
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],
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},
{
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},
{
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],
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},
{
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},
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],
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},
{
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}
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},
{
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},
{
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{
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{
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],
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}
],
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"lab": {
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},
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],
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],
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{
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}
],
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"Sample",
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],
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],
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],
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{
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},
{
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}
],
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{
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}
],
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"sample_terms": [
{
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"Item"
],
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},
{
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],
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},
{
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"@type": [
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"Item"
],
"status": "preview",
"summary": "posterior cingulate gyrus",
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}
],
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"summary": "multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 70 years) substantia nigra tissue associated with Parkinson's disease; ... and 6 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
"schema_version": "26",
"status": "preview",
"submitted_by": {
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},
"submitted_files_timestamp": "2025-03-21T04:03:05.224829+00:00",
"summary": "single-nucleus ATAC-seq (10x multiome)",
"uuid": "2577f535-2933-40c1-8261-775ad4808bea"
}