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IGVFDS5248DHZT

released
File Set Type
experimental data
Summary
MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
Assay Term
single cell massively parallel reporter assay
Sample Summaries
  • Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane1) transfected with a reporter library
Protocols
Aliases
jay-shendure:dev_CRE_mEBs_GEx_repA_10Xlane1_reads
Publications
Attribution
Jay Shendure, UW

Sequencing Results (Illumina)

3 items
Read Names
fastq
reads
R1
1
HVYHWBGXL
1
1.2 GB
Jay Shendure, UW
validated
fastq
reads
I1
1
HVYHWBGXL
1
395 MB
Jay Shendure, UW
validated
fastq
reads
R2
1
HVYHWBGXL
1
1.9 GB
Jay Shendure, UW
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane1) transfected with a reporter library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • jay-shendure:WD44_donor
male
Mus musculus

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
reporter library targeting accessible genome regions in many genomic loci

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
MPRA (scQer): element quantifications
  • jay-shendure:analysis_set_scQers_mEBs
Jay Shendure, UW

Auxiliary Datasets

2 items
Files
AuxiliarySet
quantification DNA barcode sequencing for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
  • jay-shendure:dev_CRE_mEBs_mBC_repA_10Xlane1_reads
Jay Shendure, UW
AuxiliarySet
circularized RNA barcode detection for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
  • jay-shendure:dev_CRE_mEBs_oBC_repA_10Xlane1_reads
Jay Shendure, UW