{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
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"aliases": [
"bradley-bernstein:scRNA Lib 39",
"buenrostro-bernstein:scRNA Lib 39"
],
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"@id": "/assay-terms/OBI_0002631/",
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM8784VEIE](/primary-cells/IGVFSM8784VEIE/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM8784VEIE/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS5247NYFJ](/measurement-sets/IGVFDS5247NYFJ/) has sequence file(s): [IGVFFI1600LZQR](/sequence-files/IGVFFI1600LZQR/), [IGVFFI5930QVBL](/sequence-files/IGVFFI5930QVBL/), [IGVFFI1203TXVB](/sequence-files/IGVFFI1203TXVB/), [IGVFFI9777ROTO](/sequence-files/IGVFFI9777ROTO/), [IGVFFI8645YZZS](/sequence-files/IGVFFI8645YZZS/), [IGVFFI2718XXZR](/sequence-files/IGVFFI2718XXZR/), [IGVFFI9012CZXX](/sequence-files/IGVFFI9012CZXX/), [IGVFFI8461ACOK](/sequence-files/IGVFFI8461ACOK/), [IGVFFI7786QFRH](/sequence-files/IGVFFI7786QFRH/), [IGVFFI0987GTNQ](/sequence-files/IGVFFI0987GTNQ/), [IGVFFI1087YRGJ](/sequence-files/IGVFFI1087YRGJ/), [IGVFFI4742HJZP](/sequence-files/IGVFFI4742HJZP/), [IGVFFI1880BXKQ](/sequence-files/IGVFFI1880BXKQ/), [IGVFFI3130WFAY](/sequence-files/IGVFFI3130WFAY/), [IGVFFI0478PODB](/sequence-files/IGVFFI0478PODB/), [IGVFFI7512ZBOQ](/sequence-files/IGVFFI7512ZBOQ/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS5247NYFJ/"
}
],
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{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS5247NYFJ](/measurement-sets/IGVFDS5247NYFJ/) has an `assay_term` of single-cell RNA sequencing assay but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
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"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS5247NYFJ/"
}
]
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},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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"aliases": [
"bradley-bernstein:BioSam 4565_SS-PKR 7",
"buenrostro-bernstein:BioSam 4565_SS-PKR 7"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 7), male, Homo sapiens (29 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:30:52.512913+00:00",
"summary": "single-cell RNA sequencing assay (SHARE-seq)",
"uuid": "213a66ec-b6b1-4f8c-8346-3381fc13d584"
}