IGVFDS5214DFHA

released

GRU

File Set Type

experimental data

Summary

single-cell ATAC-seq (SHARE-seq)

Assay Term

single-cell ATAC-seq

Sample Summaries

Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to hepatic oval stem cell for 7 days (cellular sub pool: SS-PKR 167)

Protocols

https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw

Aliases

buenrostro-bernstein:scATAC Lib 366

Submitter Comment

Does not have corresponding scRNA seq MeasurementSet due to failed QC

Attribution

Jason Buenrostro, Broad

(

HG011986 — Jason Buenrostro

)

Sequencing Results (Illumina)

30 items

Read Names

IGVFFI0505AGJC

fastq

reads

8910

IGVFFI6898AWPG

Illumina NovaSeq X

22LMVNLT4

126 MB

Jason Buenrostro, Broad

validated

IGVFFI0707UBSK

fastq

reads

8814

IGVFFI7996FVRQ

Illumina NovaSeq X

22LMVNLT4

140 MB

Jason Buenrostro, Broad

validated

IGVFFI1680IURW

fastq

reads

818

IGVFFI5769CWKJ

Illumina NovaSeq X

22773CLT3

280 MB

Jason Buenrostro, Broad

validated

IGVFFI1881AWGD

fastq

reads

8910

Barcode index

IGVFFI6898AWPG

Illumina NovaSeq X

22LMVNLT4

79 MB

Jason Buenrostro, Broad

validated

IGVFFI1944TTFV

fastq

reads

8430

Barcode index

IGVFFI9708GCUD

Illumina NovaSeq X

22LMVNLT4

86 MB

Jason Buenrostro, Broad

validated

IGVFFI2746UKAH

fastq

reads

818

Barcode index

IGVFFI5769CWKJ

Illumina NovaSeq X

22773CLT3

249 MB

Jason Buenrostro, Broad

validated

IGVFFI3232OBCN

fastq

reads

8526

IGVFFI4618TGDO

Illumina NovaSeq X

22LMVNLT4

134 MB

Jason Buenrostro, Broad

validated

IGVFFI4406DUVL

fastq

reads

8430

IGVFFI9708GCUD

Illumina NovaSeq X

22LMVNLT4

145 MB

Jason Buenrostro, Broad

validated

IGVFFI4648SYTS

fastq

reads

800

Barcode index

IGVFFI4065QMUC

Illumina NovaSeq X

22773CLT3

248 MB

Jason Buenrostro, Broad

validated

IGVFFI4720KULG

fastq

reads

8622

IGVFFI7268AWBZ

Illumina NovaSeq X

22LMVNLT4

141 MB

Jason Buenrostro, Broad

validated

Samples

1 item

Accession

Type

Sample Terms

Associated Construct Library Sets

Summary

IGVFSM9269EVTL

InVitroSystem

induced pluripotent stem cell

Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to hepatic oval stem cell for 7 days (cellular sub pool: SS-PKR 167)